9th BSC Doctoral Symposium 2022

Data: 10/May/2022 Time: 09:00 - 12/May/2022 Time: 18:00

Place:

The 9th BSC Doctoral Symposium will take place in Aula Master (UPC).

 

 

Target group: PhD students, as well as early stages PostDoc researchers and late stages MSc students in the BSC areas of research and complementing areas.

Cost: The Symposium is free of charge.

Primary tabs

Download here the agenda

PROGRAM

DAY 1 (May 10th)

Start time
Activity
Speaker/s
Chair
8.30h
Registration
9.00h
Welcome and opening
Josep Mª Martorell, BSC Associate Director
Maria Ribera Sancho
9.20h
Keynote talk: Competences as the key to success for strong technological developments
Bastian Koller, Mananging Director, HLRS 
 
 
Bastian Koller will present the idea behind the activity of building National Centres of Excellence in Europe and how it is being implemented. First successes will be presented and the embedding of the network of competence centres in the European HPC ecosystem will be shown. It will also become clear how important competences are in the European HPC strategy and how to interact with the (constantly growing) network at national and European level.
10.30h
Event Photo
10.40h
Coffee break & First Poster Session
 
A platform for antibody design
 Anna Maria Díaz-Rovira (LS - Electronic and Atomic Protein Modelling)
 
 
Designing a Cloud and HPC Based M&S platform to Investigate the IVD Diseases Mechanism
 Maria Paola Ferri (LS - INB)  
 
FAIRsoft - A practical implementation of FAIR principles for research software
Eva Martín del Pico (LS - INB)   
  CSDownscale: an R Package for Statistical Downscaling Jaume Ramon (ES - Earth System Services)  
  Low Input Promoter Capture Hi-C Method Enables to Decipher the Molecular Mechanisms Underlying Genetically Complex Diseases Paula López-Martí (LS - Computational Biology Life Sciences)   
  JLOH: Extracting Loss of Heterozygosity Blocks from Short-Read Sequencing Data Matteo Schiavinato (LS - Comparative Genomics)   
11.40h First Talk Session: Performance
  TACL: Interoperating asynchronous device APIs with task-based programming models David Álvarez (CS - Programming Models )  Víctor Guallar
12.00h PredIG: a predictor of T-cell immunogenicity Roc Farriol-Duran (LS - Electronic and Atomic Protein Modelling) 
12.20h
Exploring Task Scheduling Sensitivity to L1 Cache configuration on a 32-core RISC-V Processor
Lucas Morais (CS - Computer Architecture for Parallel Paradigms)
12.40h
Investigating Memory Prefetcher Performance over Parallel Applications: From Real to Simulated
Valéria Soldera Girelli (CS - Memory technologies)
13.00h
Lunch Break
14.00h
Tutorial 1st part
 
“Effective Team Work and External Collaborations”
Moisès Martínez
 
 

The purpose of the workshop is to deliver a tailor made training experience with content and strategies focused on the following:

 

    how to deal with a director and teammates,
    how to work as a part of a team and independently,
    how to work with people from other institutions,
    how to network and use the scientific community to support your own growth,
    how to deal with conflict.

 
17.00h
Adjourn

DAY 2 (May 11th)

Start time
Activity
Speaker/s
Chair
9.00h
Opening of the second day
9.10h
Second Talk Session: Simulations and Modelling 1
9.10h
The development of high-order methods for finite elements to study turbulent reacting flow
Antonio Blanco Casares (CASE - Propulsion Technologies)
Eduardo Pérez
9.30h
Implementation of cellular transport models within a multiscale simulation software
Othmane Hayoun Mya (LS - Computational Biology)
9.50h
Numerical Investigation of Unsteady Processes in Combustion using Flame Transfer Function
Phivos Andreou Koumides (CASE - Propulsion Technologies Group)
10.10h
Non-Reacting Large Eddy Simulation of a Low Swirl Burner
Fredherico Rodrigues (CASE - Propulsion Technologies)
10.30h 
Coffee break  & Second Poster Session
 
Distributed Tabulation of Flamelet Lookup Tables
Nicholas Abel (CASE - Propulsion Technologies) 
 
 
Discovering the Ethereum2 P2P Network
Mikel Cortes Goicoechea (CS - Resilience in Distributed Systems)
 
 
Multi-model Forecast Quality Assessment of CMIP6 Decadal Predictions
Carlos Delgdo-Torres (ES - Earth System Services)
 
 
Ground-Level Ozone Simulations Improved by Updating Land Cover Databases
Franco López (ES - Atmospheric Composition)
 
 
Rational Enzyme Engineering of Different Active Sites on a Xylanase
Rubén Muñoz Tafalla (LS - Electronic and Atomic Protein Modelling) 
 
 
Development of corrections for the absolute free binding energy prediction
Ignasi Puch-Giner (LS - Electronic and Atomic Protein Modelling)
 
11.40h
Third Talk Session: Performance 1
11.40h
Improving resource usage in large FPGA accelerators
Antonio Filgueras (CS - Programming Models)
 
12h
CAMP First GPU Solver: A Solution to Accelerate Chemistry in Atmospheric Models
Christian Guzman Ruiz (ES - Computational Earth Sciences)
Xavier Martorell
12.20h
b8c: an FPGA-Friendly Sparse Matrix Representation Suitable for the SpMV kernel
José Oliver Segura (CS - Programming Models)
 
12.40h
HBM, Present and Future of HPC based on FPGAs
Elias Augusto Perdomo Hourné (CS - European Exascale Accelerator)
 
13.00h
Lunch Break
14.00h
Tutorial session 2
 
“Effective Team Work and External Collaborations”
Moisès Martínez
 
 

The purpose of the workshop is to deliver a tailor made training experience with content and strategies focused on the following:

 

    how to deal with a director and teammates,
    how to work as a part of a team and independently,
    how to work with people from other institutions,
    how to network and use the scientific community to support your own growth,
    how to deal with conflict.

 
17.00h
Adjourn

DAY 3 (May 12th)

Start time
Activity
Speaker/s
Chair
9.00h
Opening of the third day
9.10h
Fourth Talk Session: Simulations and Modelling 1
9.10h
Numerical Simulations for the Atomic Beam Probe
Mátyás Aradi (CASE - Fusion) 
Dani Guallart
9.30h
Nuclear Fusion Reactor Materials: Modelling Atomic-Scale Irradiation Damage in Metal
Mary Kathleen Chessey (CASE - Fusion)
9.50h
Comparison of Five Strategies for Seasonal Prediction of Bioclimatic Indicators in the Olive Sector
Chihchung Chou (ES - Earth System Services Group)
10.10h
Adaptive points to estimate the Lebesgue constant on the simplex
Albert Jiménez Ramos (CASE - Geometry and Meshing for simulations)
 
Preparing plasma heating in ITER using integrated modelling
Tomás Bensadon (CASE - Fusion) 
10.50h
Coffee break & Third Poster Session
 
Foreign and domestic contributions to surface ozone on Spain
Roger Garatachea (ES - Atmospheric Composition) 
 
 
Respiratory tract microbiome modifications after lung transplantation and its impact in CLAD
Olfat Khannous (LS - Comparative Genomics) 
 
 
Organic Particle Export, Remineralization and Advection in the North Atlantic mesopelagic layer
M. Andrea Orihuela-García (LS - Climate Prediction)
 
 
Characterisation of Ozone levels and associated NMVOC emissions in Spain: a preliminary assessment
Kevin Oliveira (ES - Atmospheric Composition)
 
 
Experimental Analysis on the NXP’s T2080 Cache Coherence: A Step Towards MPSoCs in Critical Systems
Roger Pujol Torramorell (CS - Operating System / Computer ArchitectureInterface) 
 
 
Space Shuttle: A Test Vehicle for the Reliability of the SkyWater 130nm PDK using OpenLane and the Google/E-fabless Shuttle Run
Ivan Rodriguez-Ferrandez (CS - Operating System / Computer Architecture Interface) 
 
11.50h
Fifth Talk Session: Life Sciences
11.50h
Characterisation of inter-individual genomic variability across populations of different genetic ancestries
Rubén Chazarra Gil (LS - Transcriptomics and Functional Genomics Lab)
Raquel García
12.10h
Transcriptome Analysis of Differential Gene Expression in Disease
José Miguel Ramírez (LS - Transcriptomics and Functional Genomics Lab)
12.30h
RosneT: A Block Tensor Algebra Library for Out-of-Core Quantum Computing Simulation
Sergio Sánchez Ramírez (CASE - Quantic)
12.50h
Exploring the recent evolution of yeast pathogens using the CandidaMine database
Miquel Àngel Schikora Tamarit (LS - Comparative Genomics)

13.10h

Lunch
14.00h
Sixth Talk Session: Machine Learning and its applications
14.00h
Focus! Rating XAI Methods and Finding Biases
Anna Arias Duart (CS - High Performance Artificial Intelligence)
Daniele Lezzi
14.20h
Reaching a modular, generic and containerized development in Biomedical Natural Language Processing systems
Javier Corvi (LS - INB)
14.40h
QUARQ QUick Approximate and Relaxed Querying
Victor-Alejandro Ortiz (CASE - Smart Cities)
15.00h
Hyperparameter Optimization using Agents for Large Scale Machine Learning
Pere Vergés Boncompte (CS - Workflows and Distributed Computing)
15.20h
Final remarks and End of Doctoral Symposium
Cool off and closing drinks at the BSC terrace