Job Reference
177_25_LS_CG_RE1
Position
Research Engineer for Computational Genomics (RE1)
Data de tancament
Dijous, 06 Març, 2025
Reference: 177_25_LS_CG_RE1
Job title: Research Engineer for Computational Genomics (RE1)
About BSC
The Barcelona Supercomputing Center - Centro Nacional de Supercomputación (BSC-CNS) is the leading supercomputing center in Spain. It houses MareNostrum, one of the most powerful supercomputers in Europe, was a founding and hosting member of the former European HPC infrastructure PRACE (Partnership for Advanced Computing in Europe), and is now hosting entity for EuroHPC JU, the Joint Undertaking that leads large-scale investments and HPC provision in Europe. The mission of BSC is to research, develop and manage information technologies in order to facilitate scientific progress. BSC combines HPC service provision and R&D into both computer and computational science (life, earth and engineering sciences) under one roof, and currently has over 1000 staff from 60 countries.
Look at the BSC experience:
BSC-CNS YouTube Channel
Let's stay connected with BSC Folks!
We are particularly interested for this role in the strengths and lived experiences of women and underrepresented groups to help us avoid perpetuating biases and oversights in science and IT research. In instances of equal merit, the incorporation of the under-represented sex will be favoured.
We promote Equity, Diversity and Inclusion, fostering an environment where each and every one of us is appreciated for who we are, regardless of our differences.
If you consider that you do not meet all the requirements, we encourage you to continue applying for the job offer. We value diversity of experiences and skills, and you could bring unique perspectives to our team.
Look at the BSC experience:
BSC-CNS YouTube Channel
Let's stay connected with BSC Folks!
We are particularly interested for this role in the strengths and lived experiences of women and underrepresented groups to help us avoid perpetuating biases and oversights in science and IT research. In instances of equal merit, the incorporation of the under-represented sex will be favoured.
We promote Equity, Diversity and Inclusion, fostering an environment where each and every one of us is appreciated for who we are, regardless of our differences.
If you consider that you do not meet all the requirements, we encourage you to continue applying for the job offer. We value diversity of experiences and skills, and you could bring unique perspectives to our team.
Context And Mission
The Computational Genomics group at the Barcelona Supercomputing Center is intensively involved in developing and applying tools for personalized diagnosis, prevention and treatment protocols for health. This activity occurs within the BSC, which hosts one of the largest supercomputers in Europe: Marenostrum4, around which we develop HPC-based tools and tools linked to other technologies and architectures, like GPUs and GPFAs. Among the major scientific achievements, we can highlight the design of the SMuFin software for the fast identification of somatic variants in cancer genomes and its application for the analysis of chromosomal alterations in Chronic Lymphocytic Leukemia genomes.
The Computational Genomics group seeks a technician with bioinformatics or computer-related background to design and develop software integrated solutions for the analysis of disease genomes in close collaboration with biological and biomedical colleagues. This activity will be carried out in the context of a project part of the EUropean-CANadian Cancer network (EUCANCan) that aims to enable Personalized Medicine in Oncology by promoting the generation and sharing of harmonized genomic data.
This activity will also design and implement a pilot integration of data infrastructures in a national and international environment within the project IMPaCT (Infraestructura de Medicina de Precisión).
The candidate will be part of a subgroup in charge of developing pipelines and software solutions in the context of HPC to analyse genomic data. This involves handling thousands of genomic sequences and biomedical data, which offers a great opportunity to enter and evolve within the data engineering and bioinformatics field, which currently has strong computational needs and provides many interesting challenges.
Priority will be given to highly motivated, persistent and proactive candidates with a computer-related background and the ambition to develop their careers in computational genomics and biomedicine. More information about the group and the activity can be found at: http://cg.bsc.es/cg.
The Computational Genomics group seeks a technician with bioinformatics or computer-related background to design and develop software integrated solutions for the analysis of disease genomes in close collaboration with biological and biomedical colleagues. This activity will be carried out in the context of a project part of the EUropean-CANadian Cancer network (EUCANCan) that aims to enable Personalized Medicine in Oncology by promoting the generation and sharing of harmonized genomic data.
This activity will also design and implement a pilot integration of data infrastructures in a national and international environment within the project IMPaCT (Infraestructura de Medicina de Precisión).
The candidate will be part of a subgroup in charge of developing pipelines and software solutions in the context of HPC to analyse genomic data. This involves handling thousands of genomic sequences and biomedical data, which offers a great opportunity to enter and evolve within the data engineering and bioinformatics field, which currently has strong computational needs and provides many interesting challenges.
Priority will be given to highly motivated, persistent and proactive candidates with a computer-related background and the ambition to develop their careers in computational genomics and biomedicine. More information about the group and the activity can be found at: http://cg.bsc.es/cg.
Key Duties
- Research of bioinformatics tools that meet the analysis needs of the group and collaborative projects
- Development and automation of genomic data analysis pipelines in HPC environments.
- Benchmarking of bioinformatic tools
- Development and automation of genomic data analysis pipelines
- Management and integration of the results of different pipelines
- Genomic analysis
Requirements
-
Education
- Diploma/Bachelor's degree in Computer Science, Biotechnology, Physics, Mathematics or related discipline
-
Essential Knowledge and Professional Experience
- Knowledge of UNIX/Linux environments
- Experience with some of the following languages: Python, Bash, R
-
Additional Knowledge and Professional Experience
- Knowledge of bioinformatics/cancer genomics
- Experience in High-Performance Computing
- Knowledge or experience in Machine Learning
- Fluency in spoken and written English
-
Competences
- Good communication and presentation skills.
Conditions
- The position will be located at BSC within the Life Sciences Department
- We offer a full-time contract (37.5h/week), a good working environment, a highly stimulating environment with state-of-the-art infrastructure, flexible working hours, extensive training plan, restaurant tickets, private health insurance, support to the relocation procedures
- Duration: Open-ended contract due to technical and scientific activities linked to the project and budget duration
- Holidays: 23 paid vacation days plus 24th and 31st of December per our collective agreement
- Salary: we offer a competitive salary commensurate with the qualifications and experience of the candidate and according to the cost of living in Barcelona
- Starting date: 01/04/2025
Applications procedure and process
All applications must be submitted via the BSC website and contain:
- A full CV in English, including contact details.
- A cover/motivation letter with a statement of interest in English, clearly specifying for which specific area and topics the applicant wishes to be considered. Additionally, two references for further contacts must be included. Applications without this document will not be considered.
Development of the recruitment process
The selection will be carried out through a competitive examination system ("Concurso-Oposición"). The recruitment process consists of two phases:
- Curriculum Analysis: Evaluation of previous experience and/or scientific history, degree, training, and other professional information relevant to the position. - 40 points
- Interview phase: The highest-rated candidates at the curriculum level will be invited to the interview phase, conducted by the corresponding department and Human Resources. In this phase, technical competencies, knowledge, skills, and professional experience related to the position, as well as the required personal competencies, will be evaluated. - 60 points. A minimum of 30 points out of 60 must be obtained to be eligible for the position.
The recruitment panel will be composed of at least three people, ensuring at least 25% representation of women.
In accordance with OTM-R principles, a gender-balanced recruitment panel is formed for each vacancy at the beginning of the process. After reviewing the content of the applications, the panel will begin the interviews, with at least one technical and one administrative interview. At a minimum, a personality questionnaire as well as a technical exercise will be conducted during the process.
The panel will make a final decision, and all individuals who participated in the interview phase will receive feedback with details on the acceptance or rejection of their profile.
At BSC, we seek continuous improvement in our recruitment processes. For any suggestions or comments/complaints about our recruitment processes, please contact recruitment [at] bsc [dot] es.
For more information, please follow this link.
Deadline
The vacancy will remain open until a suitable candidate has been hired. Applications will be regularly reviewed and potential candidates will be contacted.
OTM-R principles for selection processes
BSC-CNS is committed to the principles of the Code of Conduct for the Recruitment of Researchers of the European Commission and the Open, Transparent and Merit-based Recruitment principles (OTM-R). This is applied for any potential candidate in all our processes, for example by creating gender-balanced recruitment panels and recognizing career breaks etc.
BSC-CNS is an equal opportunity employer committed to diversity and inclusion. We are pleased to consider all qualified applicants for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, age, disability or any other basis protected by applicable state or local law.
For more information follow this link
BSC-CNS is an equal opportunity employer committed to diversity and inclusion. We are pleased to consider all qualified applicants for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, age, disability or any other basis protected by applicable state or local law.
For more information follow this link