NLP for Biomedical Information Analysis

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2023

Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical–protein relations

Database

A. Miranda-Escalada, F. Mehryary, J. Luoma, D. Estrada-Zavala, L. Gasco, S. Pyysalo, A. Valencia, and M. Krallinger
Lecture Notes in Computer ScienceAdvances in Information RetrievalBioASQ at CLEF2023: The Eleventh Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge

A. Nentidis, A. Krithara, G. Paliouras, E. Farre-Maduell, S. Lima-Lopez, and M. Krallinger
Lecture Notes in Computer ScienceExperimental IR Meets Multilinguality, Multimodality, and InteractionOverview of BioASQ 2023: The Eleventh BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering

A. Nentidis, G. Katsimpras, A. Krithara, S. Lima López, E. Farre-Maduell, L. Gasco, M. Krallinger, and G. Paliouras
Redefining biomaterial biocompatibility: challenges for artificial intelligence and text mining

Trends in Biotechnology

M. Mateu-Sanz, C. V. Fuenteslópez, J. Uribe-Gomez, H. Jostein Haugen, A. Pandit, M-P. Ginebra, O. Hakimi, M. Krallinger, and A. Samara
Lecture Notes in Computer ScienceAdvances in Information RetrievalBioASQ at CLEF2023: The Eleventh Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge

A. Nentidis, A. Krithara, G. Paliouras, E. Farre-Maduell, S. Lima-Lopez, and M. Krallinger

2022

2021

2020

Mining stroke discharge reports: a new text mining tool developed by the ICTUSnet network

International Journal of Stroke

S. Barzegar, A. Gonzalez-Agirre, A. Moreno-Rojas, C. Jiménez, E. Martínez, M. Krallinger, M. Villegas, and R. Maria Vivanco-Hidalgo
Overview of MESINESP8, a Spanish Medical Semantic Indexing Task within BioASQ 2020

Working Notes of CLEF 2020 - Conference and Labs of the Evaluation Forum

C. Rodriguez-Penagos, A. Nentidis, A. Gonzalez-Agirre, A. Asensio, J. Armengol-Estapé, A. Krithara, M. Villegas, G. Paliouras, and M. Krallinger
BioASQ at CLEF2020: Large-Scale Biomedical Semantic Indexing and Question Answering

M. Krallinger, A. Krithara, A. Nentidis, G. Paliouras, and M. Villegas
Overview of BioASQ 2020: The Eighth BioASQ Challenge on Large-Scale Biomedical Semantic Indexing and Question Answering

A. Nentidis, A. Krithara, K. Bougiatiotis, M. Krallinger, C. Rodriguez-Penagos, M. Villegas, and G. Paliouras

2019

Medical Word Embeddings for Spanish: Development and Evaluation

Proceedings of the 2nd Clinical Natural Language Processing Workshop

F. Soares, M. Villegas, A. Gonzalez-Agirre, M. Krallinger, and J. Armengol-Estapé

2018

The MeSpEN Resource for English-Spanish Medical Machine Translation and Terminologies: Census of Parallel Corpora, Glossaries and Term Translations

Proceedings of the LREC 2018 Workshop “MultilingualBIO: Multilingual Biomedical Text Processing

M. Villegas, A. Intxaurrondo, A. Gonzalez-Agirre, M. Marimon, and M. Krallinger