Toni Gabaldon

2023

• Evolution of loss of heterozygosity patterns in hybrid genomes of Candida yeast pathogens

  BMC Biology

  V. Mixão, J. Carlos Nunez-Rodriguez, V. del Olmo, E. Ksiezopolska, E. Saus, T. Boekhout, A. Gácser, and T. Gabaldón
• Microbiome Profiling from Fecal Immunochemical Test Reveals Microbial Signatures with Potential for Colorectal Cancer Screening

  Cancers

  O. Khannous-Lleiffe, J. R. Willis, E. Saus, V. Moreno, S. Castellví-Bel, and T. Gabaldón
• EvolClustDB: Exploring Eukaryotic Gene Clusters with Evolutionarily Conserved Genomic Neighbourhoods

  Journal of Molecular Biology

  M. Marcet-Houben, I. Collado-Cala, D. Fuentes-Palacios, A. D. Gómez, M. Molina, A. Garisoain-Zafra, U. Chorostecki, and T. Gabaldón
• A hybrid approach to assess the structural impact of long noncoding RNA mutations uncovers key

  IUBMB Life

  E. Aydın, E. Saus, U. Chorostecki, and T. Gabaldón
• Multiplexed target enrichment of coding and non-coding transcriptomes enables studying Candida spp. infections from human derived samples

  Frontiers in Cellular and Infection Microbiology

  H. Hovhannisyan, A. Rodríguez, E. Saus, M. Vaneechoutte, and T. Gabaldón
• Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite

  Genes

  A. IbrahemHafez, B. Soriano, A. Allah Elsayed, R. Futami, R. Ceprian, R. Ramos-Ruiz, G. Martinez, F. Jose Roig, M. Angel Torres-Font, F. Naya-Catala, J. Alvar Calduch-Giner, L. Trilla-Fuertes, A. Gamez-Pozo, V. Arnau, J. Maria Sempere-Luna, J. Perez-Sánchez, T. Gabaldón, and C. Llorens
• The little skate genome and the evolutionary emergence of wing-like fins

  Nature

  F. Marlétaz, E. de la Calle-Mustienes, R. D. Acemel, C. Paliou, S. Naranjo, P. Manuel Martínez-García, I. Cases, V. A. Sleight, C. Hirschberger, M. Marcet-Houben, D. Navon, A. Andrescavage, K. Skvortsova, P. Edward Duckett, Á. González-Rajal, O. Bogdanovic, J. H. Gibcus, L. Yang, L. Gallardo-Fuentes, I. Sospedra, J. Lopez-Rios, F. Darbellay, A. Visel, J. Dekker, N. Shubin, T. Gabaldón, T. Nakamura, J. J. Tena, D. G. Lupiáñez, D. S. Rokhsar, and J. Luis Gómez-Skarmeta
• Phylogenomics of the Olea europaea complex using 15 whole genomes supports recurrent genetic admixture together with differentiation into seven subspecies

  BMC Biology

  I. Julca, P. Vargas, and T. Gabaldón

2022

• Examination of Genome-Wide Ortholog Variation in Clinical and Environmental Isolates of the Fungal Pathogen Aspergillus fumigatus

  mBio

  M. Augusta C. Horta, J. L. Steenwyk, M. E. Mead, L. H. Braz do Santos, S. Zhao, J. G. Gibbons, M. Marcet-Houben, T. Gabaldón, A. Rokas, and G. H. Goldman
• Discovery and Validation of Clinically Relevant Long Non-Coding RNAs in Colorectal Cancer

  Cancers

  M. Snyder, S. Iraola-Guzmán, E. Saus, and T. Gabaldón