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2021

Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas

Leukemia

D. Hübschmann, K. Kleinheinz, R. Wagener, S. H. Bernhart, C. López, U. H. Toprak, S. Sungalee, N. Ishaque, H. Kretzmer, M. Kreuz, S. M. Waszak, N. Paramasivam, O. Ammerpohl, S. M. Aukema, R. Beekman, A. K. Bergmann, M. Bieg, H. Binder, A. Borkhardt, C. Borst, B. Brors, P. Bruns, E. Carrillo d Pau, A. Claviez, G. Doose, A. Haake, D. Karsch, S. Haas, M-L. Hansmann, J. I. Hoell, V. Hovestadt, B. Huang, M. Hummel, C. Jäger-Schmidt, J. N. A. Kerssemakers, J. O. Korbel, D. Kube, C. Lawerenz, D. Lenze, J. H. A. Martens, G. Ott, B. Radlwimmer, E. Reisinger, J. Richter, D. Rico, P. Rosenstiel, A. Rosenwald, M. Schillhabel, S. Stilgenbauer, P. F. Stadler, J. I. Martin-Subero, M. Szczepanowski, G. Warsow, M. A. Weniger, M. Zapatka, A. Valencia, H. G. Stunnenberg, P. Lichter, P. Möller, M. Loeffler, R. Eils, W. Klapper, S. Hoffmann, L. Trümper, R. Küppers, M. Schlesner, and R. Siebert
The eTRANSAFE Project on Translational Safety Assessment through Integrative Knowledge Management: Achievements and Perspectives

Pharmaceuticals

F. Pognan, T. Steger-Hartmann, C. Díaz, N. Blomberg, F. Bringezu, K. Briggs, G. Callegaro, S. Capella-Gutierrez, E. Centeno, J. Corvi, P. Drew, W. C. Drewe, J. M. Fernández, L. I. Furlong, E. Guney, J. A. Kors, M. Angel Mayer, M. Pastor, J. Piñero, J. Manuel Ramírez-Anguita, F. Ronzano, P. Rowell, J. Saüch-Pitarch, A. Valencia, B. van de Water, J. van der Lei, E. van Mulligen, and F. Sanz
The multilayer community structure of medulloblastoma

iScience

I. Núñez-Carpintero, M. Petrizzelli, A. Zinovyev, D. Cirillo, and A. Valencia
Artificial Intelligence–Aided Precision Medicine for COVID-19: Strategic Areas of Research and Development

Journal of Medical Internet Research

E. Santus, N. Marino, D. Cirillo, E. Chersoni, A. Montagud, A. Santuccion Chadha, A. Valencia, K. Hughes, and C. Lindvall
Artificial intelligence in cancer research: learning at different levels of data granularity

Molecular Oncology

D. Cirillo, I. Núñez-Carpintero, and A. Valencia
Simulating SARS-CoV-2 epidemics by region-specific variables and modeling contact tracing app containment

Nature Digital Medicine

A. Ferrari, E. Santus, D. Cirillo, M. Ponce De Leon, N. Marino, M. Teresa Ferretti, A. Santuccion Chadha, N. Mavridis, and A. Valencia

2020

COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight

F1000Research

C. Auffray, R. Balling, N. Blomberg, M. C. Bonaldo, B. Boutron, S. Brahmachari, C. Brechot, A. Cesario, S-J. Chen, K. Clément, D. Danilenko, A. Di Meglio, A. Gelemanović, C. Goble, T. Gojobori, J. D. Goldman, M. Goldman, Y-K. Guo, J. Heath, L. Hood, P. Hunter, L. Jin, H. Kitano, B. Knoppers, D. Lancet, C. Larue, M. Lathrop, M. Laville, A. B. Lindner, A. Magnan, A. Metspalu, E. Morin, L. F. P. Ng, L. Nicod, D. Noble, L. Nottale, H. Nowotny, T. Ochoa, I. N. Okeke, T. Oni, P. Openshaw, M. Oztürk, S. Palkonen, J. T. Paweska, C. Pison, M. H. Polymeropoulos, C. Pristipino, U. Protzer, J. Roca, D. Rozman, M. Santolini, F. Sanz, G. Scambia, E. Segal, I. Serageldin, M. Bento Soares, P. Sterk, S. Sugano, G. Superti-Furga, D. Supple, J. Tegner, M. Uhlen, A. Urbani, A. Valencia, V. Valentini, S. van der Werf, M. Vinciguerra, O. Wolkenhauer, and E. Wouters
Classification in biological networks with hypergraphlet kernels

Bioinformatics

J. Lugo-Martinez, D. Zeiberg, T. Gaudelet, N. Malod-Dognin, N. Pržulj, and P. Radivojac
Unveiling new disease, pathway, and gene associations via multi-scale neural network

PLOS ONE

T. Gaudelet, N. Malod-Dognin, J. Sánchez-Valle, V. Pancaldi, A. Valencia, and N. Pržulj
Sex differences in oncogenic mutational processes

Nature Communications

C. H. Li, S. D. Prokopec, R. X. Sun, F. Yousif, N. Schmitz, P. C. Boutros, and

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