Josep Gelpi

2022

• Pre-exascale HPC approaches for molecular dynamics simulations. Covid-19 research: A use case

  WIREs Computational Molecular Science

  M. Wieczór, V. Genna, J. Aranda, R. M. Badia, J. Lluis Gelpí, V. Gapsys, B. L. de Groot, E. Lindahl, M. Municoy, A. Hospital, and M. Orozco
• ATM germline variants in a young adult with chronic lymphocytic leukemia: 8 years of genomic evolution

  Blood Cancer Journal

  R. Royo, L. Magnano, J. Delgado, S. Ruiz-Gil, J. Ll. Gelpi, H. Heyn, M. A. Taylor, T. Stankovic, X. S. Puente, F. Nadeu, and E. Campo
• BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based platform for biomolecular simulations

  Nucleic Acids Research

  G. Bayarri, P. Andrio, A. Hospital, M. Orozco, and J. Lluis Gelpí
• BioExcel Building Blocks REST API (BioBB REST API), programmatic access to interoperable biomolecular simulation

  Bioinformatics

  G. Bayarri, P. Andrio, A. Hospital, M. Orozco, and J. Lluis Gelpí

2021

• An agenda-setting paper on data sharing platforms: euCanSHare workshop

  Open Research Europe

  T. Devriendt, C. Ammann, F. W. Asselbergs, A. Bernier, R. Costas, M. G. Friedrich, J. L. Gelpí, M-R. Jarvelin, K. Kuulasmaa, K. Lekadir, M. Th. Mayrhofer, V. Papez, G. Pasterkamp, S. E. Petersen, C. Oliver Schmidt, J. Schulz-Menger, S. Söderberg, M. Shabani, G. Veronesi, D. Steven Viezzer, and P. Borry
• Identifying causative mechanisms linking early-life stress to psycho-cardio-metabolic multi-morbidity: The EarlyCause project

  PLOS ONE

  N. Mariani, A. Borsini, C. A. M. Cecil, J. F. Felix, S. Sebert, A. Cattaneo, E. Walton, Y. Milaneschi, G. Cochrane, C. Amid, J. Rajan, J. Giacobbe, Y. Sanz, A. Agustí, T. Sorg, Y. Herault, J. Miettunen, P. Parmar, N. Cattane, V. Jaddoe, J. Lötjönen, C. Buisan, M. A. Gonzál Ballester, G. Piella, J. L. Gelpí, F. Lamers, B. W. J. H. Penninx, H. Tiemeier, M. von Tottleben, R. Thiel, K. F. Heil, M-R. Jarvelin, C. Pariante, I. M. Mansuy, and K. Lekadir

2020

• Butler enables rapid cloud-based analysis of thousands of human genomesAbstract

  Nature Biotechnology

  S. Yakneen, S. M. Waszak, M. Gertz, and J. O. Korbel
• 4D Genome Rewiring during Oncogene-Induced and Replicative Senescence

  Molecular Cell

  S. Sati, B. Bonev, Q. Szabo, D. Jost, P. Bensadoun, F. Serra, V. Loubiere, G. Lucio Papadopoulos, J-C. Rivera-Mulia, L. Fritsch, P. Bouret, D. Castillo, J. Ll. Gelpi, M. Orozco, C. Vaillant, F. Pellestor, F. Bantignies, M. A. Martí-Renom, D. M. Gilbert, J-M. Lemaitre, and G. Cavalli
• The Quest for Orthologs benchmark service and consensus calls in 2020Abstract

  Nucleic Acids Research

  A. M. Altenhoff, J. Garrayo-Ventas, S. Cosentino, D. Emms, N. M. Glover, A. Hernández-Plaza, Y. Nevers, V. Sundesha, D. Szklarczyk, J. M. Fernández, L. Codó, the. Quest for Consortium, J. Ll Gelpi, J. Huerta-Cepas, W. Iwasaki, S. Kelly, O. Lecompte, M. Muffato, M. J. Martin, S. Capella-Gutierrez, P. D. Thomas, E. Sonnhammer, and C. Dessimoz
• Bioactive Conformational Ensemble Server and Database. A Public Framework to Speed Up In Silico Drug DiscoveryBioactive Conformational Ensemble Server and Database. A Public Framework to Speed Up In Silico Drug Discovery

  Journal of Chemical Theory and Computation

  S. Zivanovic, G. Bayarri, F. Colizzi, D. Moreno, J. Lluis Gelpí, R. Soliva, A. Hospital, and M. Orozco