Alfonso Valencia

2024

• Lung Tissue Multilayer Network Analysis Uncovers the Molecular Heterogeneity of Chronic Obstructive Pulmonary Disease

  American Journal of Respiratory and Critical Care Medicine

  N. Olvera, J. Sánchez-Valle, I. Núñez-Carpintero, J. Rojas-Quintero, G. Noell, S. Casas-Recasens, A. Faiz, P. Hansbro, A. Guirao, R. Lepore, D. Cirillo, A. Agustí, F. Polverino, A. Valencia, and R. Faner
• Immune digital twins for complex human pathologies: applications, limitations, and challenges

  npj Systems Biology and Applications

  A. Niarakis, R. Laubenbacher, G. An, Y. Ilan, J. Fisher, Å. Flobak, K. Reiche, M. Rodríguez Martínez, L. Geris, L. Ladeira, L. Veschini, M. L. Blinov, F. Messina, L. L. Fonseca, S. Ferreira, A. Montagud, V. Noël, M. Marku, E. Tsirvouli, M. M. Torres, L. A. Harris, T.. J. Sego, C. Cockrell, A. E. Shick, H. Balci, A. Salazar, K. Rian, A. Abdelmonem Hemedan, M. Esteban-Medina, B. Staumont, E. Hernandez-Vargas, S. Martis B, A. Madrid-Valiente, P. Karampelesis, L. Sordo Vieira, P. Harlapur, A. Kulesza, N. Nikaein, W. Garira, R. S. Malik Sheriff, J. Thakar, V. Du T. Tran, J. Carbonell-Caballero, S. Safaei, A. Valencia, A. Zinovyev, and J. A. Glazier
• Analyzing sex imbalance in EGA and dbGaP biological databases: Recommendations for better practices

  iScience

  V. Ruiz-Serra, N. Buslón, O. R. Philippe, D. Saby, M. Morales, C. Pontes, A. Muñoz Andirkó, G. L. Holliday, A. Jené, M. Moldes, J. Ramblas, A. Valencia, M. José Rementeria, A. Cortés, and D. Cirillo
• Analyzing sex imbalance in EGA and dbGaP biological databases: Recommendations for better practices

  iScience

  V. Ruiz-Serra, N. Buslón, O. R. Philippe, D. Saby, M. Morales, C. Pontes, A. Muñoz Andirkó, G. L. Holliday, A. Jené, M. Moldes, J. Rambla, A. Valencia, M. José Rementeria, A. Cortés, and D. Cirillo
• Risk of cancer development associated with disease-modifying therapies for multiple sclerosis: study protocol for a systematic review and meta-analysis of randomised and non-randomised studies

  Systematic Reviews

  F. Catalá-López, L. Tejedor-Romero, J. A. Driver, B. Hutton, J. Vicent Sánchez-Ortí, M. Ridao, A. Alonso-Arroyo, P. Correa-Ghisays, J. Forés-Martos, V. Balanzá-Martínez, A. Valencia, I. Cobos, and R. Tabarés-Seisdedos
• Rare disease research workflow using multilayer networks elucidates the molecular determinants of severity in Congenital Myasthenic Syndromes

  Nature Communications

  I. Núñez-Carpintero, M. Rigau, M. Bosio, E. O’Connor, S. Spendiff, Y. Azuma, A. Topf, R. Thompson, P. A. C. ’t Hoen, T. Chamova, I. Tournev, V. Guergueltcheva, S. Laurie, S. Beltran, S. Capella-Gutierrez, D. Cirillo, H. Lochmüller, and A. Valencia
• The 1+Million Genomes Minimal Dataset for Cancer

  Nature Genetics

  M. Riba, C. Sala, A. C. Culhane, Å. Flobak, A. Patocs, K. Boye, K. Plevova, Š. Pospíšilová, G. Gandolfi, M. J. Morelli, G. Bucci, A. Edsjö, U. Lassen, F. Al-Shahrour, N. López-Bigas, R. Hovland, E. Cuppen, A. Valencia, H. A. Poirel, R. Rosenquist, S. Scollen, J. Arenas Marquez, J. Belien, A. De Nicolo, R. De Maria, D. Torrents, and G. Tonon
• p53 rapidly restructures 3D chromatin organization to trigger a transcriptional response

  Nature Communications

  F. Serra, A. Nieto-Aliseda, L. Fanlo-Escudero, L. Rovirosa, M. Cabrera-Pasadas, A. Lazarenkov, B. Urmeneta, A. Alcalde-Merino, E. M. Nola, A. L. Okorokov, P. Fraser, M. Graupera, S. D. Castillo, J. L. Sardina, A. Valencia, and B. M. Javierre
• 3Dmapper: a command line tool for BioBank-scale mapping of variants to protein structures

  Bioinformatics

  V. Ruiz-Serra, S. Valentini, S. Madroñero, A. Valencia, and E. Porta-Pardo
• 3Dmapper: a command line tool for BioBank-scale mapping of variants to protein structures

  Bioinformatics

  V. Ruiz-Serra, S. Valentini, S. Madroñero, A. Valencia, and E. Porta-Pardo