Alfonso Valencia

2020

• Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

  Nature Communications

  M. H. Bailey, W. U. Meyerson, L. Jonathan Dursi, L-B. Wang, G. Dong, W-W. Liang, A. Weerasinghe, S. Li, Y. Li, S. Kelso, G. Saksena, K. Ellrott, M. C. Wendl, D. A. Wheeler, G. Getz, J. T. Simpson, M. B. Gerstein, and L. Ding
• How to Design AI-Driven Clinical Trials in Nuclear Medicine

  Seminars in Nuclear Medicine

  G. Delso, D. Cirillo, J. D. Kaggie, A. Valencia, U. Metser, and P. Veit-Haibach
• GOPHER, an HPC Framework for Large Scale Graph Exploration and Inference

  High Performance Computing. ISC High Performance 2020. Lecture Notes in Computer Science

  M. JosepFabregó, X. Teruel, V. Gimenez-Abalos, D. Cirillo, D. Garcia-Gasulla, S. Alvarez-Napagao, M. Garcia-Gasulla, E. Ayguadé, and A. Valencia
• Sex and gender differences and biases in artificial intelligence for biomedicine and healthcare

  Nature Digital Medicine

  D. Cirillo, S. Catuara-Solarz, C. Morey, E. Guney, L. Subirats, S. Mellino, A. Gigante, A. Valencia, M. José Rementeria, A. Santuccion Chadha, and N. Mavridis
• Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships

  Nature Communications

  J. Sánchez-Valle, H. Tejero, J. María Fernández, D. Juan, B. Urda-García, S. Capella-Gutierrez, F. Al-Shahrour, R. Tabarés-Seisdedos, A. Baudot, V. Pancaldi, and A. Valencia
• Pan-cancer analysis of whole genomes

  Nature

2019

• On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models

  Bioinformatics

  M. Ponce De Leon, I. Apaolaza, A. Valencia, and F. J. Planes
• Leveraging European infrastructures to access 1 million human genomes by 2022

  Nature Reviews Genetics

  G. Saunders, M. Baudis, R. Becker, S. Beltran, C. Béroud, E. Birney, C. Brooksbank, S. Brunak, M. Van den Bulcke, R. Drysdale, S. Capella-Gutierrez, P. Flicek, F. Florindi, P. Goodhand, I. Gut, J. Heringa, P. Holub, J. Hooyberghs, N. Juty, T. M. Keane, J. O. Korbel, I. Lappalainen, B. Leskošek, G. Matthijs, M. Th. Mayrhofer, A. Metspalu, A. Navarro, S. Newhouse, T. Nyrönen, A. Page, B. Persson, A. Palotie, H. Parkinson, J. Rambla, D. Salgado, E. Steinfelder, M. A. Swertz, A. Valencia, S. Varma, N. Blomberg, and S. Scollen
• PDBe-KB: a community-driven resource for structural and functional annotations

  Nucleic Acids Research

  M. Varadi, J. Berrisford, M. Deshpande, S. S. Nair, A. Gutmanas, D. Armstrong, L. Pravda, B. Al-Lazikani, S. Anyango, G. J. Barton, K. Berka, T. Blundell, N. Borkakoti, J. Dana, S. Das, S. Dey, P. Di Micco, F. Fraternali, T. Gibson, M. Helmer-Citterich, D. Hoksza, L-C. Huang, R. Jain, H. Jubb, C. Kannas, N. Kannan, J. Koca, R. Krivak, M. Kumar, E. D. Levy, F. Madeira, M. S. Madhusudhan, H. J. Martell, S. MacGowan, J. E. McGreig, S. Mir, A. Mukhopadhyay, L. Parca, T. Paysan-Lafosse, L. Radusky, A. Ribeiro, L. Serrano, I. Sillitoe, G. Singh, P. Skoda, R. Svobodova, J. Tyzack, A. Valencia, E. Villasclar Fernandez, W. Vranken, M. Wass, J. Thornton, M. Sternberg, C. Orengo, and S. Velankar
• Patient Dossier: Healthcare queries over distributed resources

  PLoS computational biology

  M. Vázquez, and A. Valencia