Biological data integration and management

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Showing 1 - 10 results of 19

2025

Empowering cancer research in Europe: the EUCAIM cancer imaging infrastructure

Insights into Imaging

L. Marti-Bonmati, I. Blanquer, M. Tsiknakis, G. Tsakou, R. Martinez, S. Capella-Gutierrez, S. Zullino, J. Meszaros, E. E. Bron, J. Lluis Gelpí, K. Riklund, L. Chaabane, H-P. Schlemmer, M. Aznar, P. Serrano Candelas, P. Gordebeke, M. Hierath, H. Leisz, N. D’Ascenzo, M. Castelo-Branco, I. Chouvarda, L. Fournier, S. Figueiras Gómez, A. Navarro, N. Papanikolaou, L. Barbieri, J-P. Beregi, G. Langs, D. Rodríguez González, E. Sala, Y. Roussakis, G. Di Leo, A. López-Rueda, S. Pedraza, J. Blázquez, C. Luis Parra Calderón, S. Marsoni, D. Sáez-Domingo, M. Aiello, F. Strand, M-C. Jaulent, J. Hedlund, L. Saint-Aubert, C. Catalano, R. Beets-Tan, H. Heese, A. Alberich-Bayarri, B. van Ginneken, M. Van den Bulcke, D. Rückert, E. Neri, P. Lambin, G. Marx, B. Persson, W. Vos, C. Sousa Pinto, P. Fuhrmann, M. Bobowicz, C. Hernández-Ferrer, O. Humbert, J. Miguel Ros Tejada, M. França, P. Holub, Z. Dudova, I. Huys, M. Pallocca, J. Haybaeck, P. Gazinska, A. Seebohm, T. Penzkofer, N. Sandberg, O. Gil García, F. Martin-Sanchez, and S. Scollen
The need to implement FAIR principles in biomolecular simulations

Nature Methods

R. E. Amaro, J. Åqvist, I. Bahar, F. Battistini, A. Bellaiche, D. Beltrán, P. C. Biggin, M. Bonomi, G. R. Bowman, R. A. Bryce, et al.

2024

Rare disease research workflow using multilayer networks elucidates the molecular determinants of severity in Congenital Myasthenic Syndromes

Nature Communications

I. Núñez-Carpintero, M. Rigau, M. Bosio, E. O'Connor, S. Spendiff, Y. Azuma, A. Topf, R. Thompson, T. Chamova, I. Tournev, V. Guergueltcheva, S. Laurie, S. Beltran, S. Capella-Gutierrez, D. Cirillo, H. Lochmüller, and A. Valencia

2023

Cohort Profile: The Cardiovascular Research Data Catalogue

International Journal of Epidemiology

J. Reinikainen, T. Palosaari, A. J. Canosa-Valls, C. O. Schmidt, R. Wissa, S. Chadalavada, L. Codó, J. Lluis Gelpí, B. Joseph, A. van der Lugt, E. Pacella, S. E. Petersen, E. Ruiz Pujadas, L. Szabo, T. Zeller, T. Niiranen, K. Lekadir, and K. Kuulasmaa
Data infrastructures for AI in medical imaging: a report on the experiences of five EU projects

European Radiology Experimental

H. Kondylakis, V. Kalokyri, S. Sfakianakis, K. Marias, M. Tsiknakis, A. Jimenez-Pastor, E. Camacho-Ramos, I. Blanquer, D. J. Segrelles, S. López-Huguet, C. Barelle, M. Kogut-Czarkowska, G. Tsakou, N. Siopis, Z. Sakellariou, P. Bizopoulos, V. Drossou, A. Lalas, K. Votis, P. Mallol, L. Marti-Bonmati, L. Cerdá Alberich, K. Seymour, S. Boucher, E. Ciarrocchi, L. Fromont, J. Rambla, A. Harms, A. Gutierrez, M. P. A. Starmans, F. Prior, J. Ll. Gelpi, and K. Lekadir
RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12

Nucleic Acids Research

H. Salgado, S. Gama-Castro, P. Lara, C. Mejia-Almonte, G. Alarcón-Carranza, A. G. López-Almazo, F. Betancourt-Figueroa, P. Peña-Loredo, S. Alquicira-Hernández, D. Ledezma-Tejeida, L. Arizmendi-Zagal, F. Mendez-Hernandez, A. K. Diaz-Gomez, E. Ochoa-Praxedis, L. J. Muñiz-Rascado, J. S. García-Sotelo, F. A. Flores-Gallegos, L. Gómez, C. Bonavides-Martínez, V. M. del Moral-Chávez, A. J. Hernández-Alvarez, A. Santos-Zavaleta, S. Capella-Gutierrez, J. Lluis Gelpí, and J. Collado-Vides
A new paradigm for molecular dynamics databases: the COVID-19 database, the legacy of a titanic community effort

Nucleic Acids Research

D. Beltrán, A. Hospital, J. Lluis Gelpí, and M. Orozco

2022

BioExcel Building Blocks REST API (BioBB REST API), programmatic access to interoperable biomolecular simulation

Bioinformatics

G. Bayarri, P. Andrio, A. Hospital, M. Orozco, and J. Lluis Gelpí

2021

An agenda-setting paper on data sharing platforms: euCanSHare workshop

Open Research Europe

T. Devriendt, C. Ammann, F. W. Asselbergs, A. Bernier, R. Costas, M. G. Friedrich, J. L. Gelpí, M-R. Jarvelin, K. Kuulasmaa, K. Lekadir, M. Th. Mayrhofer, V. Papez, G. Pasterkamp, S. E. Petersen, C. Oliver Schmidt, J. Schulz-Menger, S. Söderberg, M. Shabani, G. Veronesi, D. Steven Viezzer, and P. Borry
A Mouse Model Suggests That Heart Failure and Its Common Comorbidity Sleep Fragmentation Have No Synergistic Impacts on the Gut Microbiome

Microorganisms

O. Khannous-Lleiffe, J. R. Willis, E. Saus, I. Cabrera-Aguilera, I. Almendros, R. Farré, D. Gozal, N. Farré, and T. Gabaldón

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