Toni Gabaldon

2024

• New developments for the Quest for Orthologs benchmark service

  NAR Genomics and Bioinformatics

  A. Altenhoff, Y. Nevers, V. Tran, D. Jyothi, M. Martin, S. Cosentino, S. Majidian, M. Marcet-Houben, D. Fuentes-Palacios, E. Persson, T. Walsh, O. Lecompte, T. Gabaldón, S. Kelly, Y. Hu, W. Iwasaki, S. Capella-Gutierrez, C. Dessimoz, P. D. Thomas, I. Ebersberger, and E. Sonnhammer
• Reconstructing the last common ancestor of all eukaryotes

  PLOS Biology

  T. A. Richards, L. Eme, J. M. Archibald, G. Leonard, S. M. Coelho, A. de Mendoza, C. Dessimoz, P. Dolezal, L. K. Fritz-Laylin, T. Gabaldón, V. Hampl, G. J. P. L. Kops, M. M. Leger, P. Lopez-Garcia, J. O. McInerney, D. Moreira, S. A. Muñoz-Gómez, D. J. Richter, I. Ruiz-Trillo, A. E. Santoro, A. Sebé-Pedrós, B. Snel, C. W. Stairs, E. C. Tromer, J. J. E. van Hooff, B. Wickstead, T. A. Williams, A. J. Roger, J. B. Dacks, and J. G. Wideman
• Acquired amphotericin B resistance leads to fitness trade-offs that can be mitigated by compensatory evolution in Candida auris

  Nature Microbiology

  H. Carolus, D. Sofras, G. Boccarella, P. Sephton-Clark, V. Biriukov, N. C. Cauldron, C. Lobo Romero, R. Vergauwen, S. Yazdani, S. Pierson, S. Jacobs, P. Vandecruys, S. Wijnants, J. F. Meis, T. Gabaldón, P. van den Berg, J. M. Rybak, C. A. Cuomo, and P. Van Dijck
• A multidimensional assessment of in-host fitness costs of drug resistance in the opportunistic fungal pathogen Candida glabrata

  FEMS Yeast Research

  A. Arastehfar, F. Daneshnia, H. Hovhannisyan, N. Cabrera, M. Ilkit, J. V. Desai, T. Gabaldón, E. Shor, and D. S. Perlin
• Chromosome level assemblies of Nakaseomyces (Candida) bracarensis uncover two distinct clades and define its adhesin repertoire

  BMC Genomics

  M. Marcet-Houben, E. Ksiezopolska, and T. Gabaldón
• Threats from the Candida parapsilosis complex: the surge of multidrug resistance and a hotbed for new emerging pathogens

  Microbiology and Molecular Biology Reviews

  T. Gabaldón
• PhyKIT: A Multitool for Phylogenomics

  Current Protocols

  J. L. Steenwyk, G. I. Martínez‐Redondo, T. J. Buida, E. Gluck‐Thaler, X‐X. Shen, T. Gabaldón, A. Rokas, and R. Fernández
• Collateral sensitivity counteracts the evolution of antifungal drug resistance in Candida auris

  Nature Microbiology

  H. Carolus, D. Sofras, G. Boccarella, S. Jacobs, V. Biriukov, L. Goossens, A. Chen, I. Vantyghem, T. Verbeeck, S. Pierson, C. Lobo Romero, H. Steenackers, K. Lagrou, P. van den Berg, J. Berman, T. Gabaldón, and P. Van Dijck
• Quest for Orthologs in the Era of Biodiversity Genomics

  Genome Biology and Evolution

  F. Langschied, N. Bordin, S. Cosentino, D. Fuentes-Palacios, N. Glover, M. Hiller, Y. Hu, J. Huerta-Cepas, L. Pedro Coelho, W. Iwasaki, S. Majidian, S. Manzano-Morales, E. Persson, T. A. Richards, T. Gabaldón, E. Sonnhammer, P. D. Thomas, C. Dessimoz, and I. Ebersberger
• The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

  npj Biodiversity

  A. M. McCartney, G. Formenti, A. Mouton, D. De Panis, L. S. Marins, H. G. Leitão, G. Diedericks, J. Kirangwa, M. Morselli, J. Salces-Ortiz, et al.