Integrative Computational Network Biology (ICONBI)

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Showing 31 - 60 results of 61

2019

Functional geometry of protein interactomes

Bioinformatics

N. Malod-Dognin, and N. Pržulj
Towards a data-integrated cell

Nature Communications

N. Malod-Dognin, J. Petschnigg, S. F. L. Windels, J. Povh, H. Hemmingway, R. Ketteler, and N. Pržulj

2018

Graphlet Laplacians: graphlet-based neighbourhoods highlight topology-function and topology-disease relationships
Precision medicine ― A promising, yet challenging road lies ahead

Current Opinion in Systems Biology

N. Malod-Dognin, J. Petschnigg, and N. Pržulj
Higher-order molecular organization as a source of biological function

Bioinformatics

T. Gaudelet, N. Malod-Dognin, and N. Pržulj
Critical Review on Zeolite Clinoptilolite Safety and Medical Applications in vivo

Frontiers in Pharmacology

S. KraljevićPavelić, J. Simović Medica, D. Gumbarević, A. Filošević, N. Pržulj, and K. Pavelić

2017

Systematic protein–protein interaction mapping for clinically relevant human

Molecular Systems Biology

K. Sokolina, S. Kittanakom, J. Snider, M. Kotlyar, P. Maurice, J. Gandía, A. Benleulmi‐Chaachoua, K. Tadagaki, A. Oishi, V. Wong, R. H. Malty, V. Deineko, H. Aoki, S. Amin, Z. Yao, X. Morató, D. Otasek, H. Kobayashi, J. Menendez, D. Auerbach, S. Angers, N. Pržulj, M. Bouvier, M. Babu, F. Ciruela, R. Jockers, I. Jurisica, and I. Stagljar
Rebuttal to the Letter to the Editor in response to the paper: proper evaluation of alignment-free network comparison methods

Bioinformatics

Ö. NebilYaveroğlu, N. Malod-Dognin, T. Milenković, and N. Pržulj
Unified Alignment of Protein-Protein Interaction Networks

Scientific Reports

N. Malod-Dognin, K. Ban, and N. Pržulj
Omics Data Complementarity Underlines Functional Cross-Communication in Yeast

Journal of Integrative Bioinformatics

N. Malod-Dognin, and N. Pržulj

2016

Computational Methods for Integration of Biological Data

V. Gligorijević, and N. Pržulj
PATIENT-SPECIFIC DATA FUSION FOR CANCER STRATIFICATION AND PERSONALISED TREATMENT

Proceedings of the Pacific SymposiumBiocomputing 2016

R. B. Altman, K. A Dunker, L. Hunter, M. D. Ritchie, T. A. Murray, T. E. Klein, V. Gligorijević, N. Malod-Dognin, and N. Pržulj
Integrative methods for analyzing big data in precision medicine

PROTEOMICS

V. Gligorijević, N. Malod-Dognin, and N. Pržulj
Fuse: multiple network alignment via data fusion

Bioinformatics

V. Gligorijević, N. Malod-Dognin, and N. Pržulj
Network analytics in the age of big data

Science

N.. Przulj, and N.. Malod-Dognin
A global genetic interaction network maps a wiring diagram of cellular function

Science

M.. Costanzo, B.. VanderSluis, E.. N. Koch, A.. Baryshnikova, C.. Pons, G.. Tan, W.. Wang, M.. Usaj, J.. Hanchard, S.. D. Lee, V.. Pelechano, E.. B. Styles, M.. Billmann, J.. van Leeuwen, N.. van Dyk, Z.-Y.. Lin, E.. Kuzmin, J.. Nelson, J.. S. Piotrowski, T.. Srikumar, S.. Bahr, Y.. Chen, R.. Deshpande, C.. F. Kurat, S.. C. Li, Z.. Li, M.. M. Usaj, H.. Okada, N.. Pascoe, B.-J.. San Luis, S.. Sharifpoor, E.. Shuteriqi, S.. W. Simpkins, J.. Snider, H.. G. Suresh, Y.. Tan, H.. Zhu, N.. Malod-Dognin, V.. Janjic, N.. Przulj, O.. G. Troyanskaya, I.. Stagljar, T.. Xia, Y.. Ohya, A.-C.. Gingras, B.. Raught, M.. Boutros, L.. M. Steinmetz, C.. L. Moore, A.. P. Rosebrock, A.. A. Caudy, C.. L. Myers, B.. Andrews, and C.. Boone
Graphlet-based Characterization of Directed Networks

Scientific Reports

A. Sarajlić, N. Malod-Dognin, Ö. Nebil Yaveroğlu, and N. Pržulj

2015

ergm.graphlets: A Package for ERG Modeling Based on Graphlet Statistics

Journal of Statistical Software

Ö. NebilYaveroğlu, S. M. Fitzhugh, M. Kurant, A. Markopoulou, C. T. Butts, and N. Pržulj
Topology-function conservation in protein–protein interaction networks

Bioinformatics

D. Davis, Ö. Nebil Yaveroğlu, N. Malod-Dognin, A. Stojmirovic, and N. Pržulj
L-GRAAL: Lagrangian graphlet-based network aligner

Bioinformatics

N. Malod-Dognin, and N. Pržulj
Proper evaluation of alignment-free network comparison methods

Bioinformatics

Ö. NebilYaveroğlu, T. Milenković, and N. Pržulj
Methods for biological data integration: perspectives and challenges

Journal of The Royal Society Interface

V. Gligorijević, and N. Pržulj

2014

GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity

Bioinformatics

N. Malod-Dognin, and N. Pržulj
The Topology of the Growing Human Interactome DataSummary

Journal of Integrative Bioinformatics

V. Janjić, and N. Pržulj
Integration of molecular network data reconstructs Gene Ontology

Bioinformatics

V. Gligorijević, V. Janjić, and N. Pržulj
Bridging the gaps in systems biology

Molecular Genetics and Genomics

M. Cvijovic, J. Almquist, J. Hagmar, S. Hohmann, H-M. Kaltenbach, E. Klipp, M. Krantz, P. Mendes, S. Nelander, J. Nielsen, A. Pagnani, N. Pržulj, A. Raue, J. Stelling, S. Stoma, F. Tobin, J. A. H. Wodke, R. Zecchina, and M. Jirstrand
Anti-nicastrin monoclonal antibodies elicit pleiotropic anti-tumour pharmacological effects in invasive breast cancer cells

Breast Cancer Research and Treatment

A. Filipović, Y. Lombardo, M. Fronato, J. Abrahams, E. Aboagye, Q-. De Nguyen, B. Borda d’Aqua, A. Ridley, A. Green, E. Rahka, I. Ellis, C. Recchi, N. Pržulj, A. Sarajlić, J-R. Alattia, P. Fraering, M. Deonarain, and C. R. Coombes
Network wiring of pleiotropic kinases yields insight into protective role of diabetes on aneurysm

Integr. Biol.

A. Sarajlić, V. Gligorijević, D. Radak, and N. Pržulj
The integrated disease network

Integr. Biol.

K. Sun, N. Buchan, C. Larminie, and N. Pržulj
Predicting disease associations via biological network analysis

BMC Bioinformatics

K. Sun, J. P. Gonçalves, C. Larminie, and N. Pržulj

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