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2022

A structural biology community assessment of AlphaFold2 applications

Nature Structural & Molecular Biology

M. Akdel, D. E. V. Pires, E. Porta Pardo, J. Jänes, A. O. Zalevsky, B. Mészáros, P. Bryant, L. L. Good, R. A. Laskowski, G. Pozzati, A. Shenoy, W. Zhu, P. Kundrotas, V. Ruiz Serra, C. H. M. Rodrigues, A. S. Dunham, D. Burke, N. Borkakoti, S. Velankar, A. Frost, J. Basquin, K. Lindorff-Larsen, A. Bateman, A. V. Kajava, A. Valencia, S. Ovchinnikov, J. Durairaj, D. B. Ascher, J. M. Thornton, N. E. Davey, A. Stein, A. Elofsson, T. I. Croll, and P. Beltrao
Design and Characterization of In-One Protease-Esterase PluriZyme

International Journal of Molecular Sciences

L. Fernandez-Lopez, S. Roda, J. L. Gonzalez-Alfonso, F. J. Plou, V. Guallar, and M. Ferrer
3D chromatin connectivity underlies replication origin efficiency in mouse embryonic stem cells

Nucleic Acids Research

K. Jodkowska, V. Pancaldi, M. Rigau, R. Almeida, J. M. Fernández-Justel, O. Graña-Castro, S. Rodríguez-Acebes, M. Rubio-Camarillo, E. Carrillo-d Pau, D. Pisano, F. Al-Shahrour, A. Valencia, M. Gómez, and J. Méndez
Genetic, parental and lifestyle factors influence telomere lengthAbstract

Communications Biology

S. Andreu-Sánchez, G. Aubert, A. Ripoll-Cladellas, S. Henkelman, D. V. Zhernakova, T. Sinha, A. Kurilshikov, M. Carmen Cenit, M. Jan Bonder, L. Franke, C. Wijmenga, J. Fu, M. G. P. van der Wijst, M. Melé, P. Lansdorp, and A. Zhernakova
PerSVade: personalized structural variant detection in any species of interest

Genome Biology

M. ÀngelSchikora-Tamarit, and T. Gabaldón
Genetic regulation of RNA splicing in human pancreatic islets

Genome Biology

G. Atla, S. Bonàs-Guarch, M. Cuenca-Ardura, A. Beucher, D. J. M. Crouch, J. Garcia-Hurtado, I. Moran, M. Cnop, L. Eliasson, J. Lou S. Esguerra, D. L. Eizirik, L. Groop, T. S. Jensen, T. Hansen, P. Marchetti, J. M. Mercader, H. Mulder, C. R. Stabile-Barnett, C. Thirion, D. Torrents, M. Irimia, R. B. Prasad, A. L. Gloyn, L. Marselli, M. Suleiman, T. Berney, E. J. P. de Koning, J. Kerr-Conte, F. Pattou, J. A. Todd, L. Piemonti, and J. Ferrer
Chromosome-level assemblies from diverse clades reveal limited structural and gene content variation in the genome of Candida glabrata

BMC Biology

M. Marcet-Houben, M. Alvarado, E. Ksiezopolska, E. Saus, P. W. J. de Groot, and T. Gabaldón
Recent PELE Developments and Applications in Drug Discovery Campaigns

International Journal of Molecular Sciences

I. Puch-Giner, A. Molina, M. Municoy, C. Perez, and V. Guallar
Tandem metalloenzymes gate plant cell entry by pathogenic fungi

Science Advances

B. Bissaro, S. Kodama, T. Nishiuchi, A. Maria Díaz-Rovira, H. Hage, D. Ribeaucourt, M. Haon, S. Grisel, J. A. Simaan, F. Beisson, S. M. Forget, H. Brumer, M-N. Rosso, V. Guallar, R. O’Connell, M. Lafond, Y. Kubo, and J-G. Berrin
Acceleration with long vector architectures: Implementation and evaluation of the FFT kernel on NEC SX‐Aurora and RISC‐V vector extension

Concurrency and Computation: Practice and Experience

P. Vizcaino, F. Mantovani, R. Ferrer, and J. Labarta

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