Publications

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2023

HomE: Enabling homomorphic encryption of DL, a (recently started) ERC Consolidator Grant

15th Joint Laboratory for Exascale Computing (JLESC) Workshop

A. J. Pena
DPU offloading programming with the OpenMP API

The Ninth Workshop on the LLVM Compiler Infrastructure in HPC (LLVM-HPC)

M. Usman, S. Iserte, R. Ferrer, and A. J. Pena
Data infrastructures for AI in medical imaging: a report on the experiences of five EU projects

European Radiology Experimental

H. Kondylakis, V. Kalokyri, S. Sfakianakis, K. Marias, M. Tsiknakis, A. Jimenez-Pastor, E. Camacho-Ramos, I. Blanquer, D. J. Segrelles, S. López-Huguet, C. Barelle, M. Kogut-Czarkowska, G. Tsakou, N. Siopis, Z. Sakellariou, P. Bizopoulos, V. Drossou, A. Lalas, K. Votis, P. Mallol, L. Marti-Bonmati, L. Cerdá Alberich, K. Seymour, S. Boucher, E. Ciarrocchi, L. Fromont, J. Rambla, A. Harms, A. Gutierrez, M. P. A. Starmans, F. Prior, J. Ll. Gelpi, and K. Lekadir
RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12

Nucleic Acids Research

H. Salgado, S. Gama-Castro, P. Lara, C. Mejia-Almonte, G. Alarcón-Carranza, A. G. López-Almazo, F. Betancourt-Figueroa, P. Peña-Loredo, S. Alquicira-Hernández, D. Ledezma-Tejeida, L. Arizmendi-Zagal, F. Mendez-Hernandez, A. K. Diaz-Gomez, E. Ochoa-Praxedis, L. J. Muñiz-Rascado, J. S. García-Sotelo, F. A. Flores-Gallegos, L. Gómez, C. Bonavides-Martínez, V. M. del Moral-Chávez, A. J. Hernández-Alvarez, A. Santos-Zavaleta, S. Capella-Gutierrez, J. Lluis Gelpí, and J. Collado-Vides
Efficient Execution of SpGEMM on Long Vector Architectures

32nd International Symposium on High-Performance Parallel and Distributed Computing (HPDC)

V. Le Fèvre, and M. Casas
An Open-Source Framework for Efficient Numerically-Tailored Computations

33rd International Conference on Field-Programmable Logic and Applications (FPL)

L. Ledoux, and M. Casas
A new paradigm for molecular dynamics databases: the COVID-19 database, the legacy of a titanic community effort

Nucleic Acids Research

D. Beltrán, A. Hospital, J. Lluis Gelpí, and M. Orozco
Ameliorating the Courant-Friedrichs-Lewy condition in spherical coordinates: A double FFT filter method for general relativistic MHD in dynamical spacetimes

Phys. Rev. D

L. Ji, V. Mewes, Y. Zlochower, L. Ennoggi, F. G. Lopez Armengol, M. Campanelli, F. Cipolletta, and Z. B. Etienne
Systematic characterization of regulatory variants of blood pressure genes

Cell Genomics

W. Oliveros, K. Delfosse, D. F. Lato, K. Kiriakopulos, M. Mokhtaridoost, A. Said, B. J. McMurray, J. W. L. Browning, K. Mattioli, G. Meng, J. Ellis, S. Mital, M. Melé, and P. G. Maass
Single-cell profiling of lncRNA expression during Ebola virus infection in rhesus macaques

Nature communications

L. Santus, M. Sopena Ríos, R. García-Pérez, A. E. Lin, G. C. Adams, K. G. Barnes, K. J. Siddle, S. Wohl, F. Reverter, J. L. Rin, R. S. Bennet, L. E. Hensley, P. C. Sabet, and M. Melé

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