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2022

Secondary structure prediction of long noncoding RNA: review and experimental comparison of existing approaches

Briefings in Bioinformatics

L. A. Bugnon, A. A. Edera, S. Prochetto, M. Gerard, J. Raad, E. Fenoy, M. Rubiolo, U. Chorostecki, T. Gabaldón, F. Ariel, L. E. Di Persia, D. H. Milone, and G. Stegmayer
Patterns of Genomic Variation in the Opportunistic Pathogen Candida glabrata Suggest the Existence of Mating and a Secondary Association with Humans

Current Biology

L. Carreté, E. Ksiezopolska, C. Pegueroles, E. Gómez-Molero, E. Saus, S. Iraola-Guzmán, D. Loska, O. Bader, C. Fairhead, and T. Gabaldón
Citizen-science reveals changes in the oral microbiome in Spain through age and lifestyle factors

npj Biofilms and Microbiomes

J. R. Willis, E. Saus, S. Iraola-Guzmán, E. Ksiezopolska, L. Cozzuto, L. A. Bejarano, N. Andreu-Somavilla, M. Alloza-Trabado, A. Blanco, A. Puig-Sola, E. Broglio, C. Carolis, J. Ponomarenko, J. Hecht, and T. Gabaldón
Genome analysis of five recently described species of the CUG-Ser clade uncovers Candida theae as a new hybrid lineage with pathogenic potential in the Candida parapsilosis species complex

DNA Research

V. Mixão, V. del Olmo, E. Hegedűsová, E. Saus, L. Pryszcz, A. Cillingová, J. Nosek, and T. Gabaldón
Changes in the stool and oropharyngeal microbiome in obsessive-compulsive disorder

Scientific Reports

L. Domènech, J. Willis, M. Alemany-Navarro, M. Morell, E. Real, G. Escaramis, S. Bertolín, D. Sánchez Chinchilla, S. Balcells, C. Segalàs, X. Estivill, J. M. Menchón, T. Gabaldón, P. Alonso, and R. Rabionet
Candidemia Among Coronavirus Disease 2019 Patients in Turkey Admitted to Intensive Care Units: A Retrospective Multicenter Study

Open Forum Infectious Diseases

A. Arastehfar, N. Ünal, T. Hoşbul, M. Alper Özarslan, A. Sultan Karakoyun, F. Polat, D. Fuentes, R. Gümral, T. Turunç, F. Daneshnia, D. S. Perlin, C. Lass-Florl, T. Gabaldón, M. Ilkit, and H. M Nguyen
Trends in yeast diversity discovery

Fungal Diversity

T. Boekhout, A. S. Amend, F. El Baidouri, T. Gabaldón, J. Geml, M. Mittelbach, V. Robert, C. Shuhui Tan, B. Turchetti, D. Vu, Q-M. Wang, and A. Yurkov
Lung microbiota predict invasive pulmonary aspergillosis and its outcome in immunocompromised patients

Thorax

A. Hérivaux, J. R. Willis, T. Mercier, K. Lagrou, S. M. Gonçalves, R. A. Gonçales, J. Maertens, A. Carvalho, T. Gabaldón, and C. Cunha
The era of reference genomes in conservation genomics

Trends in Ecology & Evolution

G. Formenti, K. Theissinger, C. Fernandes, I. Bista, A. Bombarely, C. Bleidorn, C. Ciofi, A. Crottini, J. A. Godoy, J. Höglund, et al.
Graphlet eigencentralities capture novel central roles of genes in pathways

PLOS ONE

S. F. L. Windels, N. Malod-Dognin, and N. Pržulj

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