Publications

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2007

Continuum analysis of conformational sampling in solution

M. Orozco, I. Marchán, and I. Soteras
Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers

A. Pérez, I. Marchán, D. Svozil, J. Sponer, T. E. Cheatham, C. Laughton, and M. Orozco
Theoretical study of large conformational transitions in DNA: The B<->A conformational change in water and ethanol/water

A. Noy, A. Pérez, C. Laughton, and M. Orozco
The (In)dependence of alternative splicing and gene duplication

D. Talavera, C. Vogel, M. Orozco, SA. Teichmann, and X. de la Cruz
Dissection of the recognition properties of p38 MAP Kinase. Determination of the binding mode of a new pyridinyl-heterocycle inhibitor family

R. Soliva, J L. Gelpí, C. Almansa, M. Virgili, and M. Orozco
A new paradigm for molecular dynamics simulations of macromolecules

M. Orozco
Determining promoter location based on DNA structure first-principles calculations

JR. Goñi, A. Pérez, D. Torrents, and M. Orozco
Triplex formation using oligonucleotide clamps carrying 8-aminopurines

A. Aviñó, M. Grimau, M. Alvira, R. Eritja, R. Gargallo, M. Orozco, and C. González
Entering molecular dynamics in the biological time scale. Microsecond simulation of DNA

A. Pérez, F J. Luque, and M. Orozco
Binding affinities of oligonucleotides and PNAs containing phenoxazine and G-clamp cytosine analogs are unusually sequence-dependent

J. A. Ortega, J R. Blas, M. Orozco, A. Grandas, E. Pedroso, and J. Robles

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