Publications

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2016

INSECT 2.0: a web-server for genome-wide cis -regulatory modules predictionAbstract

Bioinformatics

G. R. Parra, C. O. Rohr, D. Koile, C. Perez-Castro, and P. Yankilevich
Protein Repeats from First PrinciplesAbstract

Scientific Reports

P. Turjanski, G. R. Parra, R. Espada, V. Becher, and D. U. Ferreiro
Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics

Nucleic Acids Research

G. R. Parra, N. P. Schafer, L. G. Radusky, M-Y. Tsai, B. A. Guzovsky, P. G. Wolynes, and D. U. Ferreiro

2015

Repeat proteins challenge the concept of structural domains

Biochemical Society Transactions

R. Espada, G. R. Parra, M. J. Sippl, T. Mora, A. M. Walczak, and D. U. Ferreiro
Capturing coevolutionary signals inrepeat proteins

BMC Bioinformatics

R. Espada, G. R. Parra, T. Mora, A. M. Walczak, and D. U. Ferreiro
Structural and Energetic Characterization of the Ankyrin Repeat Protein Family

PLOS Computational Biology

G. R. Parra, R. Espada, N. Verstraete, and D. U. Ferreiro

2014

RepeatsDB: a database of tandem repeat protein structures

Nucleic Acids Research

T. Di Domenico, E. Potenza, I. Walsh, G. R. Parra, M. Giollo, G. Minervini, D. Piovesan, A. Ihsan, C. Ferrari, A. V. Kajava, and S. C. E. Tosatto

2013

Detecting Repetitions and Periodicities in Proteins by Tiling the Structural Space

The Journal of Physical Chemistry B

G. R. Parra, R. Espada, I. E. Sánchez, M. J. Sippl, and D. U. Ferreiro
INSECT: IN-silico SEarch for Co-occurring Transcription factorsAbstract

Bioinformatics

C. O. Rohr, G. R. Parra, P. Yankilevich, and C. Perez-Castro

2012

Protein frustratometer: a tool to localize energetic frustration in protein molecules

Nucleic Acids Research

M.. Jenik, G. R. Parra, L.. G. Radusky, A.. Turjanski, P.. G. Wolynes, and D.. U. Ferreiro

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