Publications

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Showing 71 - 80 results of 109

2020

Pan-cancer analysis of whole genomes

Nature

2019

On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models

Bioinformatics

M. Ponce De Leon, I. Apaolaza, A. Valencia, and F. J. Planes
Leveraging European infrastructures to access 1 million human genomes by 2022

Nature Reviews Genetics

G. Saunders, M. Baudis, R. Becker, S. Beltran, C. Béroud, E. Birney, C. Brooksbank, S. Brunak, M. Van den Bulcke, R. Drysdale, S. Capella-Gutierrez, P. Flicek, F. Florindi, P. Goodhand, I. Gut, J. Heringa, P. Holub, J. Hooyberghs, N. Juty, T. M. Keane, J. O. Korbel, I. Lappalainen, B. Leskošek, G. Matthijs, M. Th. Mayrhofer, A. Metspalu, A. Navarro, S. Newhouse, T. Nyrönen, A. Page, B. Persson, A. Palotie, H. Parkinson, J. Rambla, D. Salgado, E. Steinfelder, M. A. Swertz, A. Valencia, S. Varma, N. Blomberg, and S. Scollen
PDBe-KB: a community-driven resource for structural and functional annotations

Nucleic Acids Research

M. Varadi, J. Berrisford, M. Deshpande, S. S. Nair, A. Gutmanas, D. Armstrong, L. Pravda, B. Al-Lazikani, S. Anyango, G. J. Barton, K. Berka, T. Blundell, N. Borkakoti, J. Dana, S. Das, S. Dey, P. Di Micco, F. Fraternali, T. Gibson, M. Helmer-Citterich, D. Hoksza, L-C. Huang, R. Jain, H. Jubb, C. Kannas, N. Kannan, J. Koca, R. Krivak, M. Kumar, E. D. Levy, F. Madeira, M. S. Madhusudhan, H. J. Martell, S. MacGowan, J. E. McGreig, S. Mir, A. Mukhopadhyay, L. Parca, T. Paysan-Lafosse, L. Radusky, A. Ribeiro, L. Serrano, I. Sillitoe, G. Singh, P. Skoda, R. Svobodova, J. Tyzack, A. Valencia, E. Villasclar Fernandez, W. Vranken, M. Wass, J. Thornton, M. Sternberg, C. Orengo, and S. Velankar
Patient Dossier: Healthcare queries over distributed resources

PLoS computational biology

M. Vázquez, and A. Valencia
Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm

Journal of Cheminformatics

M. Pérez-Pérez, G. Pérez-Rodríguez, A. Blanco-Míguez, F. Fdez-Riverola, A. Valencia, M. Krallinger, and A. Lourenço
The bio.tools registry of software tools and data resources for the life sciences

Genome Biology

J. Ison, H. Ienasescu, P. Chmura, E. Rydza, H. Ménager, M. Kalaš, V. Schwämmle, B. Grüning, N. Beard, R. Lopez, S. Duvaud, H. Stockinger, B. Persson, R. Svobodová Vařeková, T. Raček, J. Vondrášek, H. Peterson, A. Salumets, I. Jonassen, R. Hooft, T. Nyrönen, A. Valencia, S. Capella, J. Gelpí, F. Zambelli, B. Savakis, B. Leskošek, K. Rapacki, C. Blanchet, R. Jimenez, A. Oliveira, G. Vriend, O. Collin, J. van Helden, P. Løngreen, and S. Brunak
BIOLITMAP: a web-based geolocated, temporal and thematic visualization of the evolution of bioinformatics publications

Bioinformatics

A. Bazaga, A. Valencia, and M-J. Rementeria
Precision medicine needs pioneering clinical bioinformaticians

Briefings in Bioinformatics

G. Gómez-López, J. Dopazo, J. C. Cigudosa, A. Valencia, and F. Al-Shahrour
Molecular Inverse Comorbidity between Alzheimer’s Disease and Lung Cancer: New Insights from Matrix Factorization

International Journal of Molecular Sciences

A. Greco, J. Sanchez Valle, V. Pancaldi, A. Baudot, E. Barillot, M. Caselle, A. Valencia, A. Zinovyev, and L. Cantini

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