Publications

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2011

A Parallel Fluid-Particle Solver

11th U.S. National Congress on Computational Mechanics

C. Samaniego, G.. Houzeaux, and M. Vázquez
On the numerical stability and mass-lumping schemes for explicit enriched meshfree methods

IJNME

H. Talebi, C. Samaniego, E. Samaniego, and T. Rabczuk
Numerical simulation of air flow in the large airways

Submitted to Computers & Fluids

D. J. Doorly, G.. Houzeaux, D. J. Taylor, H. Calmet, and M. Vázquez
Investigating Scaling Behavior of Monte Carlo Codes for Dense Matrix Inversion

Supercomputing 2011, ScalA Workshop, ACM Companion Volume Proceedings

J. Strassburg, and V. Alexandrov
Can Agent Intelligence be used to Achieve Fault Tolerant Parallel Computing Systems?

Parallel Processing Letters

B. Varghese, G. T. McKee, and V. Alexandrov
Monte Carlo Scalable Algorithms for Computational Finance

Procedia Computer Science

J. Strassburg, V. Alexandrov, and G. C. Martel
Identity and Access Management in Cloud Computing

in Cloud Computing for Enterprise Architectures, Mahmood Zaigham and Hill Richard (Eds.)

K. Ahmed, and V. Alexandrov
Prediction of protein binding sites and hot spots

WIREs Comput. Mol. Sci.

J. Fernández-Recio
Community-wide assessment of protein-interface modeling suggests improvements to design methodology.

Journal of molecular biology

S. J. Fleishman, T. A. Whitehead, E-M. Strauch, J. E. Corn, S. Qin, H-X. Zhou, J. C. Mitchell, O. N. A. Demerdash, M. Takeda-Shitaka, G. Terashi, I. H. Moal, X. Li, P. A. Bates, M. Zacharias, H. Park, J-su. Ko, H. Lee, C. Seok, T. Bourquard, J. Bernauer, A. Poupon, J. Azé, S. Soner, S K. Ovali, P. Ozbek, N B. Tal, T. Haliloglu, H. Hwang, T. Vreven, B. G. Pierce, Z. Weng, L. Pérez-Cano, C. Pons, J. Fernández-Recio, F. Jiang, F. Yang, X. Gong, L. Cao, X. Xu, B. Liu, P. Wang, C. Li, C. Wang, C. H. Robert, M. Guharoy, S. Liu, Y. Huang, L. Li, D. Guo, Y. Chen, Y. Xiao, N. London, Z. Itzhaki, O. Schueler-Furman, Y. Inbar, V. Potapov, M. Cohen, G. Schreiber, Y. Tsuchiya, E. Kanamori, D. M. Standley, H. Nakamura, K. Kinoshita, C. M. Driggers, R. G. Hall, J. L. Morgan, V. L. Hsu, J. Zhan, Y. Yang, Y. Zhou, P. L. Kastritis, A. M. J. J. Bonvin, W. Zhang, C. J. Camacho, K. P. Kilambi, A. Sircar, J. J. Gray, M. Ohue, N. Uchikoga, Y. Matsuzaki, T. Ishida, Y. Akiyama, R. Khashan, S. Bush, D. Fouches, A. Tropsha, J. Esquivel-Rodríguez, D. Kihara, B. P. Stranges, R. Jacak, B. Kuhlman, S-Y. Huang, X. Zou, S. J. Wodak, J. Janin, and D. Baker
LRR conservation mapping to predict functional sites within protein leucine-rich repeat domains.

PloS one

L. Helft, V. Reddy, X. Chen, T. Koller, L. Federici, J. Fernández-Recio, R. Gupta, and A. Bent

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