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2023

PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks

npj Syst Biol Appl

M. Ponce-de-Leon, A. Montagud, V. Noël, A. Meert, G. Pradas, E. Barillot, L. Calzone, and A. Valencia
The FAIR Cookbook - the essential resource for and by FAIR doersAbstractThe FAIR Cookbook - the essential resource for and by FAIR doers

Scientific Data

P. Rocca-Serra, W. Gu, V. Ioannidis, T. Abbassi-Daloii, S. Capella-Gutierrez, I. Chandramouliswaran, A. Splendiani, T. Burdett, R. T. Giessmann, D. Henderson, D. Batista, I. Emam, Y. Gadiya, L. Giovanni, E. Willighagen, C. Evelo, A. J. G. Gray, P. Gribbon, N. Juty, D. Welter, K. Quast, P. Peeters, T. Plasterer, C. Wood, E. van der Horst, D. Reilly, H. van Vlijmen, S. Scollen, A. Lister, M. Thurston, R. Granell, G. Backianathan, S. Baier, A. Cambon Thomsen, M. Cook, M. Courtot, M. d’Arcy, K. Dauth, E. Marin del Piico, L. Garcia, U. Goldmann, V. Grouès, D. J. B. Clarke, E. Lefloch, I. Liyanage, P. Papadopoulos, C. Pommier, E. Reynares, F. Ronzano, A. Delfin-Rossaro, V. Sagatopam, A. Sedani, V. Sedlyarov, L. Shilova, S. Singh, J. Strubel, K. van Bochove, Z. Warnes, P. Woollard, F. Xu, A. Zaliani, and S-A. Sansone
Mutational topography reflects clinical neuroblastoma heterogeneity

Cell Genomics

E. Rodríguez-Fos, M. Planas-Fèlix, M. Burkert, M. Puiggròs, J. Toedling, N. Thiessen, E. Blanc, A. Szymansky, F. Hertwig, N. Ishaque, D. Beule, D. Torrents, A. Eggert, R. P. Koche, R. F. Schwarz, K. Haase, J. H. Schulte, and A. G. Henssen
Whole genome analysis of two sympatric human Mansonella: Mansonella perstans and Mansonella sp “DEUX”

Frontiers in Cellular and Infection Microbiology

M. Rodi, C. Gross, T. Lucas Sandri, L. Berner, M. Marcet-Houben, E. Kocak, M. Pogoda, N. Casadei, C. Köhler, A. Kreidenweiss, S. Todagbe Agnandji, T. Gabaldón, S. Ossowski, and J. Held
Whole-genome sequencing confirms a persistent candidaemia clonal outbreak due to multidrug-resistant Candida parapsilosis

Journal of Antimicrobial Chemotherapy

F. Daneshnia, S. Hilmioğlu-Polat, M. Ilkit, D. Fuentes, L. Lombardi, U. Binder, J. Scheler, F. Hagen, M. K. Mansour, G. Butler, C. Lass-Florl, T. Gabaldón, and A. Arastehfar
Worldwide emergence of fluconazole-resistant Candida parapsilosis: current framework and future research roadmap

The Lancet Microbe

F. Daneshnia, J. N. de Almei Júnior, M. Ilkit, L. Lombardi, A. M. Perry, M. Gao, C. J. Nobile, M. Egger, D. S. Perlin, B. Zhai, T. M. Hohl, T. Gabaldón, A. Lopes Colombo, M. Hoenigl, and A. Arastehfar
How genomics can help biodiversity conservation

Trends in Genetics

K. Theissinger, C. Fernandes, G. Formenti, I. Bista, P. R. Berg, C. Bleidorn, A. Bombarely, A. Crottini, G. R. Gallo, J. A. Godoy, et al.
A hybrid approach to assess the structural impact of long noncoding RNA mutations uncovers key NEAT1 interactions in colorectal cancer

IUBMB Life

E. Aydın, E. Saus, U. Chorostecki, and T. Gabaldón
Nothing makes sense in drug resistance except in the light of evolution

Current Opinion in Microbiology

T. Gabaldón
Evolution of loss of heterozygosity patterns in hybrid genomes of Candida yeast pathogens

BMC Biology

V. Mixão, J. Carlos Nunez-Rodriguez, V. del Olmo, E. Ksiezopolska, E. Saus, T. Boekhout, A. Gácser, and T. Gabaldón

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