Martin Krallinger

2019

• PharmaCoNER: Pharmacological Substances, Compounds and proteins Named Entity Recognition track

  Proceedings of The 5th Workshop on BioNLP Open Shared Tasks

  A. Gonzalez-Agirre, M. Marimon, A. Intxaurrondo, O. Rabal, M. Villegas, and M. Krallinger
• Automatic de-identification of medical texts in spanish: the meddocan track, corpus, guidelines, methods and evaluation of results

  Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2019). vol. TBA, p. TBA. CEUR Workshop Proceedings

  M. Marimon, A. Gonzalez-Agirre, A. Intxaurrondo, H. Rodríguez, J. Antonio Lo Martin, M. Villegas, and M. Krallinger
• PharmacoNER Tagger: a deep learning-based tool for automatically finding chemicals and drugs in Spanish medical texts

  Genomics & Informatics

  J. Amengol-Estapé, F. Soares, M. Marimon, and M. Krallinger
• Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies

  Proceedings of the Fourth Conference on Machine Translation (Volume 3: Shared Task Papers, Day 2)

  R. Bawden, K. Bretonnel Cohen, C. Grozea, A. Jimeno Yepes, M. Kittner, M. Krallinger, N. Mah, A. Neveol, M. Neves, F. Soares, A. Siu, K. Verspoor, and M. Vicente Navarro
• Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm

  Journal of Cheminformatics

  M. Pérez-Pérez, G. Pérez-Rodríguez, A. Blanco-Míguez, F. Fdez-Riverola, A. Valencia, M. Krallinger, and A. Lourenço
• BSC Participation in the WMT Translation of Biomedical Abstracts

  Proceedings of the Fourth Conference on Machine Translation (Volume 3: Shared Task Papers, Day 2)

  F. Soares, and M. Krallinger
• Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies

  Proceedings of the Fourth Conference on Machine Translation (Volume 3: Shared Task Papers, Day 2)

  R. Bawden, K. Bretonnel Cohen, C. Grozea, A. Jimeno Yepes, M. Kittner, M. Krallinger, N. Mah, A. Neveol, M. Neves, F. Soares, A. Siu, K. Verspoor, and M. Vicente Navarro
• Medical Word Embeddings for Spanish: Development and Evaluation

  Proceedings of the 2nd Clinical Natural Language Processing Workshop

  F. Soares, M. Villegas, A. Gonzalez-Agirre, M. Krallinger, and J. Armengol-Estapé

2018

• Resources, guidelines and annotations for the recognition, definition resolution and concept normalization of Spanish clinical abbreviations: the BARR2 corpus

  Proceedings of SEPLN

  A. Intxaurrondo, J. Carlos de la Torre, H. Rodríguez, M. Marimon, J. Antonio Lopez-Martin, A. Gonzalez-Agirre, J. Santamaria, M. Villegas, and M. Krallinger
• Finding Mentions of Abbreviations and Their Definitions in Spanish Clinical Cases: The BARR2 Shared Task Evaluation Results

  IberEval 2018

  A. Intxaurrondo, M. Marimon, A. Gonzalez-Agirre, J. Antonio Lopez-Martin, H. Rodríguez, J. Santamaria, M. Villegas, and M. Krallinger