PATC Course: Simulation Environments for Life Sciences
Date: 14/Mar/2016 Time: 09:00 - 15/Mar/2016 Time: 18:00
Barcelona Supercomputing Centre,
within the UPC Campus Nord premises.
Room VX208, Vertex building
Target group: Level: (All courses are designed for specialists with at least 1st cycle degree or similar background experience) INTERMEDIATE: for trainees with some theoretical and practical knowledge.
Cost: There is no registration fee. The attendees would need to cover the expenses for travel, accommodation and meals.
Primary tabs
Day 1
Session 1
09.00h – Welcome & Introduction (JLG)
10.30h – Break
11.00h – Atomistic MD Algorithm (JLG)
11.45h – Algorithm improvements & HPC (JLG)
12.30h – Break
Session 2
14.00h – Simulation Setup (AH)
15.00h – Setup and Analysis Hands On (AH)
16.00h – Break
16.30h – Setup and Analysis Hands On (AH)
18.00h – Adjourn
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Day 2
Session 3
09.00h – Simulation DBs (MoDEL) (PA)
10.00h – Simulation Data Management (PA)
10.30h – Break
11.00h – Coarse Grained MD (AE)
12.00h – Application Examples (PD)
13.00h – Break
Session 4
14.00h – Coarse Grained MD manual slides Hands on (AE)
16.00h – Break
16.30h – Free Hands-on
18.00h – End of the course
AE: Agustí Emperador (IRB) , AH: Adam Hospital (IRB), JLG: Josep Ll. Gelpi (BSC-IRB- UB), MO: Modesto Orozco (BSC-IRB-UB), PA: Pau Andrio (BSC), PD: Pablo Dans(IRB)