Rodrigo Gonzalo Parra

2024

• Frustraevo: a web server to localize and quantify the conservation of local energetic frustration in protein familiesAbstract

  Nucleic Acids Research

  G. R. Parra, M. I. Freiberger, M. Poley-Gil, M. Fernandez-Martin, L. G. Radusky, V. Ruiz-Serra, P. G. Wolynes, D. U. Ferreiro, and A. Valencia

2023

• Local energetic frustration conservation in protein families and superfamilies

  Nature Communications

  M. I. Freiberger, V. Ruiz-Serra, C. Pontes, M. Romero-Durana, P. Galaz-Davison, C. A. Ramírez-Sarmiento, C. D. Schuster, M. A. Marti, P. G. Wolynes, D. U. Ferreiro, G. R. Parra, and A. Valencia

2022

• Resolving the fine structure in the energy landscapes of repeat proteinsAbstract

  QRB Discovery

  M. N. Sanches, G. R. Parra, R. G. Viegas, A. B. Oliveira, P. G. Wolynes, D. U. Ferreiro, and V. B. P. Leite

2021

• FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulationsAbstractSummaryAvailability and implementationSupplementary information

  Bioinformatics

  A. O. Rausch, M. I. Freiberger, C. O. Leonetti, D. M. Luna, L. G. Radusky, P. G. Wolynes, D. U. Ferreiro, and G. R. Parra

2019

• Reconstructing complex lineage trees from scRNA-seq data using MERLoTAbstract

  Nucleic Acids Research

  G. R. Parra, N. Papadopoulos, L. Ahumada-Arranz, J. El Kholtei, N. Mottelson, Y. Horokhovsky, B. Treutlein, and J. Soeding
• Local frustration around enzyme active sitesSignificance

  Proceedings of the National Academy of Sciences

  M. I. Freiberger, B. A. Guzovsky, P. G. Wolynes, G. R. Parra, and D. U. Ferreiro

2017

• Inferring repeat-protein energetics from evolutionary information

  PLOS Computational Biology

  R. Espada, G. R. Parra, T. Mora, A. M. Walczak, and D. U. Ferreiro

2016

• INSECT 2.0: a web-server for genome-wide cis -regulatory modules predictionAbstract

  Bioinformatics

  G. R. Parra, C. O. Rohr, D. Koile, C. Perez-Castro, and P. Yankilevich
• Protein Repeats from First PrinciplesAbstract

  Scientific Reports

  P. Turjanski, G. R. Parra, R. Espada, V. Becher, and D. U. Ferreiro
• Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics

  Nucleic Acids Research

  G. R. Parra, N. P. Schafer, L. G. Radusky, M-Y. Tsai, B. A. Guzovsky, P. G. Wolynes, and D. U. Ferreiro