Publications

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2022

Task-based Acceleration of Bidirectional Recurrent Neural Networks on Multi-core Architectures

2022 IEEE International Parallel and Distributed Processing Symposium (IPDPS)

R. Sharma, and M. Casas
Communication-aware Sparse Patterns for the Factorized Approximate Inverse Preconditioner

Proceedings of the 31st International Symposium on High-Performance Parallel and Distributed Computing (HPDC '22)

S. Laut, M. Casas, and R. Borrell
A Generator of Numerically-Tailored and High-Throughput Accelerators for Batched GEMMs

2022 IEEE 30th Annual International Symposium on Field-Programmable Custom Computing Machines (FCCM)

L. Ledoux, and M. Casas
Validation and Sensitivity analysis for a nasal spray deposition computational model

International Journal of Pharmaceutics

H. Calmet, D. Oks, A. Santiago, G. Houzeaux, B. Haut, J. Goole, and P. Lambert
Validating NEUTRO, a deterministic finite element neutron transport solver for fusion applications, with literature tests, experimental benchmarks and other neutronic codes

Plasma Physics and Controlled Fusion

E. Goldberg, M. Circuns i Duxans, O. Ortega Gelabert, M. J. Mantsinen, and A. Soba
ExTRI: Extraction of transcription regulation interactions from literature

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms

M. Vazquez, M. Krallinger, F. Leitner, M. Kuiper, A. Valencia, and A. Laegreid
Lecture Notes in Computer ScienceAdvances in Information RetrievalBioASQ at CLEF2022: The Tenth Edition of the Large-scale Biomedical Semantic Indexing and Question Answering Challenge

A. Nentidis, A. Krithara, G. Paliouras, L. Gasco, and M. Krallinger
Detection of oncogenic and clinically actionable mutations in cancer genomes critically depends on variant calling tools

Bioinformatics

C. A. Garcia-Prieto, F. Martínez-Jiménez, A. Valencia, and E. Porta-Pardo
The structural coverage of the human proteome before and after AlphaFold

PLoS computational biology

E. Porta-Pardo, V. Ruiz-Serra, S. Valentini, and A. Valencia
Tailored meshing for parallel 3D electromagnetic modeling using high-order edge elements

Journal of Computational Science

O. Castillo-Reyes, A. Amor-Martin, A. Botella, P. Anquez, and L. E. García-Castillo

Pages