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2009

A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA

R. Lavery, K. Zakrzewska, D. Beveridge, T. C. Bishop, D. Case, T. E. Cheatham, S. Dixit, B. Jayaram, F. Lankas, C. Laughton, JH. Maddocks, A. Michon, R. Osman, M. Orozco, A. Pérez, N. Spacková, and J. Sponer
Nucleic Acid Themed Issue. Editorial

C. Laughton, and M. Orozco
Ab initio study of structural, tautomeric, pairing and electronic properties of seleno-derivatives of thymine

A. Vánzquez-Mayagoita, O. Huertas, G. Brancolini, B. G. Sumpter, M. Orozco, F J. Luque, R.di. Felici, and M. Fuentes-Cabrera
Unique Tautomeric and Recognition Properties of Thioketothymines?

I. Faustino, A. Aviñó, I. Marchán, F J. Luque, R. Eritja, and M. Orozco
Single stranded loops of quadruplex DNA as key benchmark for testing nucleic acids force fields

E. Fadrná, N. Spacková, J. Sarzyñska, J. Koca, M. Orozco, T. E. Cheatham, and J. Sponer
The impact of monovalent ion force-field model in nucleic acids simulations

A. Noy, I. Soteras, F J. Luque, and M. Orozco
Theoretical Characterization of the Dynamical Behavior and Transport Properties of alpha,gamma-Peptide Nanotubes in Solution

R. García-Fandiño, J. Granja, M. D'Abramo, and M. Orozco
On the use of low resolution data to improve structure predictions of proteins and protein complexes

M. D'Abramo, T. Meyer, P. Bernadó, J. Fernández-Recio, and M. Orozco
Conformationally rigid nucleoside probes help understand the role of sugar pucker and nucleobase orientation in the thrombin-binding aptamer

H. Saneyoshi, S. Mazzini, A. Aviñó, G. Portella, C. González, M. Orozco, VE. Marquez, and R. Eritja
Performance of the IEF-MST Solvation Continuum Model in a Blind Test Prediction of Hydration Free Energies

I. Soteras, F. Forti, M. Orozco, and F J. Luque

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