Publications

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2024

Rare disease research workflow using multilayer networks elucidates the molecular determinants of severity in Congenital Myasthenic Syndromes

Nature Communications

I. Núñez-Carpintero, M. Rigau, M. Bosio, E. O’Connor, S. Spendiff, Y. Azuma, A. Topf, R. Thompson, P. A. C. ’t Hoen, T. Chamova, I. Tournev, V. Guergueltcheva, S. Laurie, S. Beltran, S. Capella-Gutierrez, D. Cirillo, H. Lochmüller, and A. Valencia
Profiling Bacteria in the Lungs of Patients with Severe Influenza Versus COVID-19 with or without Aspergillosis

American Journal of Respiratory and Critical Care Medicine

S. Feys, M. Cardinali-Benigni, H. Moon Lauwers, C. Jacobs, A. Stevaert, S. M. Gonçalves, C. Cunha, Y. Debaveye, G. Hermans, J. Heylen, S. Humblet-Baron, K. Lagrou, L. Maessen, P. Meersseman, M. Peetermans, A. Redondo-Rios, L. Seldeslachts, M. R. Starick, K. Thevissen, G. Vande Velde, C. Vandenbriele, L. Vanderbeke, A. Wilmer, L. Naesens, F. L. van de Veerdonk, J. Van Weyenbergh, T. Gabaldón, J. Wauters, and A. Carvalho
Recent gene selection and drug resistance underscore clinical adaptation across Candida species

Nature Microbiology

M. ÀngelSchikora-Tamarit, and T. Gabaldón
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Nature Methods

F. J. Pardo-Palacios, D. Wang, F. Reese, M. Diekhans, S. Carbonell-Sala, B. Williams, J. E. Loveland, M. De María, M. S. Adams, G. Balderrama-Gutierrez, A. K. Behera, J. M. Gonzale Martinez, T. Hunt, J. Lagarde, C. E. Liang, H. Li, M. Jerryd Meade, D. A. Moraga Amador, A. D. Prjibelski, I. Birol, H. Bostan, A. M. Brooks, M. Hasan Çelik, Y. Chen, M. R. M. Du, C. Felton, J. Göke, S. Hafezqorani, R. Herwig, H. Kawaji, J. Lee, J-L. Li, M. Lienhard, A. Mikheenko, D. Mulligan, K. Ming Nip, M. Pertea, M. E. Ritchie, A. D. Sim, A. D. Tang, Y. Kei Wan, C. Wang, B. Y. Wong, C. Yang, I. Barnes, A. E. Berry, S. Capella-Gutierrez, A. Cousineau, N. Dhillon, J. M. Fernandez-Gonzalez, L. Ferrández-Peral, N. Garcia-Reyero, S. Götz, C. Hernández-Ferrer, L. Kondratova, T. Liu, A. Martinez-Martin, C. Menor, J. Mestre-Tomás, J. M. Mudge, N. G. Panayotova, A. Paniagua, D. Repchevsky, X. Ren, E. Rouchka, B. Saint-John, E. Sapena, L. Sheynkman, M. Laird Smith, M-M. Suner, H. Takahashi, I. A. Youngworth, P. Carninci, N. D. Denslow, R. Guigó, M. E. Hunter, R. Maehr, Y. Shen, H. U. Tilgner, B. J. Wold, C. Vollmers, A. Frankish, K. Fai Au, G. M. Sheynkman, A. Mortazavi, A. Conesa, and A. N. Brooks
FAIRsoft—a practical implementation of FAIR principles for research software

Bioinformatics

E. Martíndel Pico, J. Lluis Gelpí, and S. Capella-Gutierrez
Multi-omic and single-cell profiling of chromothriptic medulloblastoma reveals genomic and transcriptomic consequences of genome instabilityAbstract

Nature Communications

P. Smirnov, M. J. Przybilla, M. Simovic-Lorenz, G. R. Parra, H. Susak, M. Ratnaparkhe, J. K. L. Wong, V. Körber, J-P. Mallm, G. Philippos, M. Sill, T. Kolb, R. Kumar, N. Casiraghi, K. Okonechnikov, D. R. Ghasemi, K. Korinna Maaß, K. W. Pajtler, A. Jauch, A. Korshunov, T. Höfer, M. Zapatka, S. M. Pfister, W. Huber, O. Stegle, and A. Ernst
A contact‐based analysis of local energetic frustration dynamics identifies key residues enabling Abstract

Protein Science

J. González‐Higueras, M. Inés Freiberger, P. Galaz‐Davison, G. R. Parra, and C. A. Ramírez‐Sarmiento
Catalytic Synergy between Pd Nanoclusters and Ligand-Functionalized Layered Silicates for Improved Formic Acid Dehydrogenation

ACS Applied Materials & Interfaces

E. Doustkhah, M. Yusufoğlu, H. El-Hosainy, H. Zarenezhad, Y. Ide, J. Gutiérrez-Moreno, and H. Assadi
Catalytic Synergy between Pd Nanoclusters and Ligand-Functionalized Layered Silicates for Improved Formic Acid Dehydrogenation

ACS Applied Materials & Interfaces

E. Doustkhah, M. Yusufoğlu, H. El-Hosainy, H. Zarenezhad, Y. Ide, J. Gutiérrez Moreno, and H. Assadi
Large Model Cognitive Radio: Software-Defined Radios and Advanced Language Models

IEEE 23rd International Conference on Ubiquitous Computing and Communications (IUCC 2024)

J. de Curtò, and I. de Zarzà

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