Publications

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2006

Identification and analysis of genes and pseudogenes within duplicated regions in the human and mouse genomes

M. Suyama, ED. Harrington, P. Bork, and D. Torrents
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

M. Suyama, D. Torrents, and P. Bork
Benzoderivatives of nucleic acid bases as modified DNA building blocks

O. Huertas, J R. Blas, I. Soteras, M. Orozco, and F J. Luque
Theoretical study of the Hoogsteen<–>Watson-Crick junctions in DNA

E. Cubero, F J. Luque, and M. Orozco
Destabilization of quadruplex DNA by 8-aminoguanine

J. López de la Osa, C. González, R. Gargallo, E. Cubero, A. Aviñó, M. Orozco, and R. Eritja
Datamining of molecular dynamics trajectories of nucleic acids

A. Noy, T. Meyer, M. Rueda, C. Ferrer, A. Valencia, A. Pérez, X. de la Cruz, J M. López-Bes, F J. Luque, and M. Orozco
Nature of base stacking. Reference quantum chemical stacking energies in ten unique B-DNA base pair steps

J. Sponer, P. Jurecka, I. Marchán, F J. Luque, M. Orozco, and P. Hobza
Essential Dyanmics: A Tool for Efficient Trajectory Compression and Management

T. Meyer, C. Ferrer-Costa, A. Pérez, M. Rueda, A. Bidon-Chanal, F J. Luque, C. Laughton, and M. Orozco
Aromaticity induced changes in the electronic properties of size-expanded DNA bases. The case of xC

M. Fuentes-Cabrera, P. Lipkowski, O. Huertas, B. G. Sumpter, M. Orozco, F J. Luque, JC. Wells, and J. Leszczynski
Ligand-induced dynamical regulation of NO conversion in Mycobacterium Tubercolisis truncated-hemoglobin-N

A. Bidon-Chanal, M. Martí, A. Crespo, M. Milani, M. Orozco, M. Bolognesi, F J. Luque, and D. A. Estrín

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