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2024

Frustraevo: a web server to localize and quantify the conservation of local energetic frustration in protein familiesAbstract

Nucleic Acids Research

G. R. Parra, M. I. Freiberger, M. Poley-Gil, M. Fernandez-Martin, L. G. Radusky, V. Ruiz-Serra, P. G. Wolynes, D. U. Ferreiro, and A. Valencia

2023

Local energetic frustration conservation in protein families and superfamilies

Nature Communications

M. I. Freiberger, V. Ruiz-Serra, C. Pontes, M. Romero-Durana, P. Galaz-Davison, C. A. Ramírez-Sarmiento, C. D. Schuster, M. A. Marti, P. G. Wolynes, D. U. Ferreiro, G. R. Parra, and A. Valencia

2022

Resolving the fine structure in the energy landscapes of repeat proteinsAbstract

QRB Discovery

M. N. Sanches, G. R. Parra, R. G. Viegas, A. B. Oliveira, P. G. Wolynes, D. U. Ferreiro, and V. B. P. Leite

2021

FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulationsAbstractSummaryAvailability and implementationSupplementary information

Bioinformatics

A. O. Rausch, M. I. Freiberger, C. O. Leonetti, D. M. Luna, L. G. Radusky, P. G. Wolynes, D. U. Ferreiro, and G. R. Parra

2019

Reconstructing complex lineage trees from scRNA-seq data using MERLoTAbstract

Nucleic Acids Research

G. R. Parra, N. Papadopoulos, L. Ahumada-Arranz, J. El Kholtei, N. Mottelson, Y. Horokhovsky, B. Treutlein, and J. Soeding
Local frustration around enzyme active sitesSignificance

Proceedings of the National Academy of Sciences

M. I. Freiberger, B. A. Guzovsky, P. G. Wolynes, G. R. Parra, and D. U. Ferreiro

2017

Inferring repeat-protein energetics from evolutionary information

PLOS Computational Biology

R. Espada, G. R. Parra, T. Mora, A. M. Walczak, and D. U. Ferreiro

2016

INSECT 2.0: a web-server for genome-wide cis -regulatory modules predictionAbstract

Bioinformatics

G. R. Parra, C. O. Rohr, D. Koile, C. Perez-Castro, and P. Yankilevich
Protein Repeats from First PrinciplesAbstract

Scientific Reports

P. Turjanski, G. R. Parra, R. Espada, V. Becher, and D. U. Ferreiro
Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics

Nucleic Acids Research

G. R. Parra, N. P. Schafer, L. G. Radusky, M-Y. Tsai, B. A. Guzovsky, P. G. Wolynes, and D. U. Ferreiro

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