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2025

Isomorphic Structures and Operator Analysis in Mimetic Discretizations [invited symposia]

Current Developments in Mimetic Differences and Applications Part I of II. SIAM Conference on Computational Science and Engineering (CSE25).

J. de Curtò, and I. de Zarzà

2024

New developments for the Quest for Orthologs benchmark service

NAR Genomics and Bioinformatics

A. Altenhoff, Y. Nevers, V. Tran, D. Jyothi, M. Martin, S. Cosentino, S. Majidian, M. Marcet-Houben, D. Fuentes-Palacios, E. Persson, T. Walsh, O. Lecompte, T. Gabaldón, S. Kelly, Y. Hu, W. Iwasaki, S. Capella-Gutierrez, C. Dessimoz, P. D. Thomas, I. Ebersberger, and E. Sonnhammer
Reconstructing the last common ancestor of all eukaryotes

PLOS Biology

T. A. Richards, L. Eme, J. M. Archibald, G. Leonard, S. M. Coelho, A. de Mendoza, C. Dessimoz, P. Dolezal, L. K. Fritz-Laylin, T. Gabaldón, V. Hampl, G. J. P. L. Kops, M. M. Leger, P. Lopez-Garcia, J. O. McInerney, D. Moreira, S. A. Muñoz-Gómez, D. J. Richter, I. Ruiz-Trillo, A. E. Santoro, A. Sebé-Pedrós, B. Snel, C. W. Stairs, E. C. Tromer, J. J. E. van Hooff, B. Wickstead, T. A. Williams, A. J. Roger, J. B. Dacks, and J. G. Wideman
Acquired amphotericin B resistance leads to fitness trade-offs that can be mitigated by compensatory evolution in Candida auris

Nature Microbiology

H. Carolus, D. Sofras, G. Boccarella, P. Sephton-Clark, V. Biriukov, N. C. Cauldron, C. Lobo Romero, R. Vergauwen, S. Yazdani, S. Pierson, S. Jacobs, P. Vandecruys, S. Wijnants, J. F. Meis, T. Gabaldón, P. van den Berg, J. M. Rybak, C. A. Cuomo, and P. Van Dijck
A multidimensional assessment of in-host fitness costs of drug resistance in the opportunistic fungal pathogen Candida glabrata

FEMS Yeast Research

A. Arastehfar, F. Daneshnia, H. Hovhannisyan, N. Cabrera, M. Ilkit, J. V. Desai, T. Gabaldón, E. Shor, and D. S. Perlin
Chromosome level assemblies of Nakaseomyces (Candida) bracarensis uncover two distinct clades and define its adhesin repertoire

BMC Genomics

M. Marcet-Houben, E. Ksiezopolska, and T. Gabaldón
Threats from the Candida parapsilosis complex: the surge of multidrug resistance and a hotbed for new emerging pathogens

Microbiology and Molecular Biology Reviews

T. Gabaldón
PhyKIT: A Multitool for Phylogenomics

Current Protocols

J. L. Steenwyk, G. I. Martínez‐Redondo, T. J. Buida, E. Gluck‐Thaler, X‐X. Shen, T. Gabaldón, A. Rokas, and R. Fernández
Collateral sensitivity counteracts the evolution of antifungal drug resistance in Candida auris

Nature Microbiology

H. Carolus, D. Sofras, G. Boccarella, S. Jacobs, V. Biriukov, L. Goossens, A. Chen, I. Vantyghem, T. Verbeeck, S. Pierson, C. Lobo Romero, H. Steenackers, K. Lagrou, P. van den Berg, J. Berman, T. Gabaldón, and P. Van Dijck
Quest for Orthologs in the Era of Biodiversity Genomics

Genome Biology and Evolution

F. Langschied, N. Bordin, S. Cosentino, D. Fuentes-Palacios, N. Glover, M. Hiller, Y. Hu, J. Huerta-Cepas, L. Pedro Coelho, W. Iwasaki, S. Majidian, S. Manzano-Morales, E. Persson, T. A. Richards, T. Gabaldón, E. Sonnhammer, P. D. Thomas, C. Dessimoz, and I. Ebersberger

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