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2023

Local energetic frustration conservation in protein families and superfamilies

Nature Communications

M. I. Freiberger, V. Ruiz-Serra, C. Pontes, M. Romero-Durana, P. Galaz-Davison, C. A. Ramírez-Sarmiento, C. D. Schuster, M. A. Marti, P. G. Wolynes, D. U. Ferreiro, G. R. Parra, and A. Valencia

2022

Resolving the fine structure in the energy landscapes of repeat proteinsAbstract

QRB Discovery

M. N. Sanches, G. R. Parra, R. G. Viegas, A. B. Oliveira, P. G. Wolynes, D. U. Ferreiro, and V. B. P. Leite

2019

Local frustration around enzyme active sitesSignificance

Proceedings of the National Academy of Sciences

M. I. Freiberger, B. A. Guzovsky, P. G. Wolynes, G. R. Parra, and D. U. Ferreiro

2017

Inferring repeat-protein energetics from evolutionary information

PLOS Computational Biology

R. Espada, G. R. Parra, T. Mora, A. M. Walczak, and D. U. Ferreiro

2016

Protein Repeats from First PrinciplesAbstract

Scientific Reports

P. Turjanski, G. R. Parra, R. Espada, V. Becher, and D. U. Ferreiro
Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics

Nucleic Acids Research

G. R. Parra, N. P. Schafer, L. G. Radusky, M-Y. Tsai, B. A. Guzovsky, P. G. Wolynes, and D. U. Ferreiro

2015

Structural and Energetic Characterization of the Ankyrin Repeat Protein Family

PLOS Computational Biology

G. R. Parra, R. Espada, N. Verstraete, and D. U. Ferreiro

2013

Detecting Repetitions and Periodicities in Proteins by Tiling the Structural Space

The Journal of Physical Chemistry B

G. R. Parra, R. Espada, I. E. Sánchez, M. J. Sippl, and D. U. Ferreiro