BioFVM-X

Computing Architecture Distributed Computing BSC Group: Life Sciences Software
The motivation of this work is that BioFVM (http://BioFVM.MathCancer.org) supports only on-node shared memory parallelism using OpenMP. We have developed BioFVM_X as it adds MPI to BioFVM to parallelize the core kernels of BioFVM using MPI. Some core kernels are: Domain Partitioning, Basic Agent Generation, Gaussian Profile building, File Writing, Direct Solver (Thomas' algorithm). Most of the MPI-based parallel functions are made available in BioFVM_parallel.cpp.
Software Author: 
Miguel Ponce de León, Arnau Montagud, Gaurav Saxena, David Vicente, Alfonso Valencia
License: 

BSD 3-Clause License

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BSD License (Version 3.0) (Latest Version)

Link below to download BioFVM

Release Notes