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2024

Synthetic data: how could it be used in infectious disease research?

Future Microbiology

S-C. Fragkouli, D. Solanki, L. J. Castro, F. E. Psomopoulos, N. Queralt-Rosinach, D. Cirillo, and L. C. Crossman
Impact of gender on the willingness to participate in clinical trials and undergo related procedures in individuals from an Alzheimer’s prevention research cohort

Alzheimer's Research & Therapy

L. Canals-Gispert, A. Cañas-Martínez, G. Huesa, M. Suárez- Ca Alomà, M. Milà-Alomà, E. Arenaza-Urquijo, D. Cirillo, A. Schumacher Dimech, M. Florencia Iulita, J. Novakova Martinkova, M. Carmela Tartaglia, F-C. Quevenco, A. Santuccion Chadha, G. Sánchez-Benavides, C. Minguillón, M. Teresa Ferretti, K. Fauria, and A. Brugulat-Serrat
Analyzing sex imbalance in EGA and dbGaP biological databases: Recommendations for better practices

iScience

V. Ruiz-Serra, N. Buslón, O. R. Philippe, D. Saby, M. Morales, C. Pontes, A. Muñoz Andirkó, G. L. Holliday, A. Jené, M. Moldes, J. Ramblas, A. Valencia, M. José Rementeria, A. Cortés, and D. Cirillo
New developments for the Quest for Orthologs benchmark service

NAR Genomics and Bioinformatics

A. Altenhoff, Y. Nevers, V. Tran, D. Jyothi, M. Martin, S. Cosentino, S. Majidian, M. Marcet-Houben, D. Fuentes-Palacios, E. Persson, T. Walsh, O. Lecompte, T. Gabaldón, S. Kelly, Y. Hu, W. Iwasaki, S. Capella-Gutierrez, C. Dessimoz, P. D. Thomas, I. Ebersberger, and E. Sonnhammer
Reconstructing the last common ancestor of all eukaryotes

PLOS Biology

T. A. Richards, L. Eme, J. M. Archibald, G. Leonard, S. M. Coelho, A. de Mendoza, C. Dessimoz, P. Dolezal, L. K. Fritz-Laylin, T. Gabaldón, V. Hampl, G. J. P. L. Kops, M. M. Leger, P. Lopez-Garcia, J. O. McInerney, D. Moreira, S. A. Muñoz-Gómez, D. J. Richter, I. Ruiz-Trillo, A. E. Santoro, A. Sebé-Pedrós, B. Snel, C. W. Stairs, E. C. Tromer, J. J. E. van Hooff, B. Wickstead, T. A. Williams, A. J. Roger, J. B. Dacks, and J. G. Wideman
Acquired amphotericin B resistance leads to fitness trade-offs that can be mitigated by compensatory evolution in Candida auris

Nature Microbiology

H. Carolus, D. Sofras, G. Boccarella, P. Sephton-Clark, V. Biriukov, N. C. Cauldron, C. Lobo Romero, R. Vergauwen, S. Yazdani, S. Pierson, S. Jacobs, P. Vandecruys, S. Wijnants, J. F. Meis, T. Gabaldón, P. van den Berg, J. M. Rybak, C. A. Cuomo, and P. Van Dijck
A multidimensional assessment of in-host fitness costs of drug resistance in the opportunistic fungal pathogen Candida glabrata

FEMS Yeast Research

A. Arastehfar, F. Daneshnia, H. Hovhannisyan, N. Cabrera, M. Ilkit, J. V. Desai, T. Gabaldón, E. Shor, and D. S. Perlin
Chromosome level assemblies of Nakaseomyces (Candida) bracarensis uncover two distinct clades and define its adhesin repertoire

BMC Genomics

M. Marcet-Houben, E. Ksiezopolska, and T. Gabaldón
Threats from the Candida parapsilosis complex: the surge of multidrug resistance and a hotbed for new emerging pathogens

Microbiology and Molecular Biology Reviews

T. Gabaldón
PhyKIT: A Multitool for Phylogenomics

Current Protocols

J. L. Steenwyk, G. I. Martínez‐Redondo, T. J. Buida, E. Gluck‐Thaler, X‐X. Shen, T. Gabaldón, A. Rokas, and R. Fernández

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