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2023

An Integrated Workflow to Study the Promoter-Centric Spatio-Temporal Genome Architecture in Scarce Cell Populations

Journal of Visualized Experiments

L. Rovirosa, L. Tomas-Daza, B. Urmeneta, A. Valencia, and B. M. Javierre
Engaging European society at the forefront of cancer research and care

Molecular Oncology

M. Baumann, J. Celis, U. Ringborg, M. Heitor, A. Berns, T. Albreht, J. Arabadjiev, M. Boutros, M. Brandenburg, H. Canhao, F. Carneiro, C. Chomienne, F. De Lorenzo, A. M. M. Eggermont, A. Font, E. Garralda, M. Goulart, R. Henrique, M. Lawler, L. Maier‐Hein, F. Meunier, S. Oberst, P. Oliveira, M. Papatriantafyllou, J. Schüz, E. Solary, A. Valencia, R. Vargas, E. Weiderpass, and N. Wilking
Lessons Learned from a Performance Analysis and Optimization of a Multiscale Cellular Simulation

PASC '23: Platform for Advanced Scientific Computing ConferenceProceedings of the Platform for Advanced Scientific Computing Conference

A. Huebl, C. Silvano, T. Robinson, M. Clascà, M. Garcia-Gasulla, A. Montagud, J. Carbonell Caballero, and A. Valencia
eTRANSAFE: data science to empower translational safety assessment

Nature Reviews Drug Discovery

F. Sanz, F. Pognan, T. Steger-Hartmann, C. Díaz, S. Asakura, A. Amberg, N. Bécourt-Lhote, N. Blomberg, N. Bosc, K. Briggs, F. Bringezu, C. Brulle-Wohlhueter, S. Brunak, R. Bueters, G. Callegaro, S. Capella-Gutierrez, E. Centeno, J. Corvi, M. T. D. Cronin, P. Drew, G. Duchateau-Nguyen, G. F. Ecker, S. Escher, E. Felix, M. Ferreiro, M. Frericks, L. I. Furlong, R. Geiger, C. George, M. Grandits, D. Ivanov-Draganov, J. Kilgour-Christie, T. Kiziloren, J. A. Kors, N. Koyama, A. Kreuchwig, A. R. Leach, M-A. Mayer, P. Monecke, W. Muster, C. Miyamoto Nakazawa, G. Nicholson, R. Parry, M. Pastor, J. Piñero, N. Oberhauser, J. Manuel Ramírez-Anguita, A. Rodrigo, A. Smajic, M. Schaefer, S. Schieferdecker, I. Soininen, E. Terricabras, P. Trairatphisan, S. C. Turner, A. Valencia, B. van de Water, J. L. van der Lei, E. M. van Mulligen, E. Vock, and D. Wilkinson
Molecular bases of comorbidities: present and future perspectives

Trends in Genetics

J. Sánchez-Valle, and A. Valencia
Low input capture Hi-C (liCHi-C) identifies promoter-enhancer interactions at high-resolution

Nature Communications

L. Tomas-Daza, L. Rovirosa, P. López-Martí, A. Nieto-Aliseda, F. Serra, A. Planas-Riverola, O. Molina, R. McDonald, C. Ghevaert, E. Cuatrecasas, D. Costa, M. Camós, C. Bueno, P. Menéndez, A. Valencia, and B. M. Javierre
Predicting the evolution of COVID-19 mortality risk: A recurrent neural network approach

Computer Methods and Programs in Biomedicine Update

M. Villegas, A. Gonzalez-Agirre, A. Gutiérrez-Fandiño, J. Armengol-Estapé, C. Pio Carrino, D. Pérez-Fernández, F. Soares, P. Serrano, M. Pedrera, N. García, and A. Valencia

2022

Parallel model exploration for tumor treatment simulations

Computational Intelligence

C. Akasiadis, M. Ponce‐de‐Leon, A. Montagud, E. Michelioudakis, A. Atsidakou, E. Alevizos, A. Artikis, A. Valencia, and G. Paliouras
Look-alike humans identified by facial recognition algorithms show genetic similarities

Cell Reports

R. S. Joshi, M. Rigau, C. A. García-Prieto, M. Castro de Moura, D. Piñeyro, S. Morán, V. Davalos, P. Carrión, M. Ferrando-Bernal, I. Olalde, C. Lalueza-Fox, A. Navarro, C. Fernández-Tena, D. Aspandi, F. M. Sukno, X. Binefa, A. Valencia, and M. Esteller
ECCB2022: the 21st European Conference on Computational Biology

Bioinformatics

S. Capella-Gutierrez, E. Alloza, L. Rubinat-Ripoll, A. Conesa, and A. Valencia

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