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2021

Simulating SARS-CoV-2 epidemics by region-specific variables and modeling contact tracing app containment

Nature Digital Medicine

A. Ferrari, E. Santus, D. Cirillo, M. Ponce De Leon, N. Marino, M. Teresa Ferretti, A. Santuccion Chadha, N. Mavridis, and A. Valencia

2020

COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight

F1000Research

C. Auffray, R. Balling, N. Blomberg, M. C. Bonaldo, B. Boutron, S. Brahmachari, C. Brechot, A. Cesario, S-J. Chen, K. Clément, D. Danilenko, A. Di Meglio, A. Gelemanović, C. Goble, T. Gojobori, J. D. Goldman, M. Goldman, Y-K. Guo, J. Heath, L. Hood, P. Hunter, L. Jin, H. Kitano, B. Knoppers, D. Lancet, C. Larue, M. Lathrop, M. Laville, A. B. Lindner, A. Magnan, A. Metspalu, E. Morin, L. F. P. Ng, L. Nicod, D. Noble, L. Nottale, H. Nowotny, T. Ochoa, I. N. Okeke, T. Oni, P. Openshaw, M. Oztürk, S. Palkonen, J. T. Paweska, C. Pison, M. H. Polymeropoulos, C. Pristipino, U. Protzer, J. Roca, D. Rozman, M. Santolini, F. Sanz, G. Scambia, E. Segal, I. Serageldin, M. Bento Soares, P. Sterk, S. Sugano, G. Superti-Furga, D. Supple, J. Tegner, M. Uhlen, A. Urbani, A. Valencia, V. Valentini, S. van der Werf, M. Vinciguerra, O. Wolkenhauer, and E. Wouters
Classification in biological networks with hypergraphlet kernels

Bioinformatics

J. Lugo-Martinez, D. Zeiberg, T. Gaudelet, N. Malod-Dognin, N. Pržulj, and P. Radivojac
Unveiling new disease, pathway, and gene associations via multi-scale neural network

PLOS ONE

T. Gaudelet, N. Malod-Dognin, J. Sánchez-Valle, V. Pancaldi, A. Valencia, and N. Pržulj
Sex differences in oncogenic mutational processes

Nature Communications

C. H. Li, S. D. Prokopec, R. X. Sun, F. Yousif, N. Schmitz, P. C. Boutros, and
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Nature Communications

M. H. Bailey, W. U. Meyerson, L. Jonathan Dursi, L-B. Wang, G. Dong, W-W. Liang, A. Weerasinghe, S. Li, Y. Li, S. Kelso, G. Saksena, K. Ellrott, M. C. Wendl, D. A. Wheeler, G. Getz, J. T. Simpson, M. B. Gerstein, and L. Ding
How to Design AI-Driven Clinical Trials in Nuclear Medicine

Seminars in Nuclear Medicine

G. Delso, D. Cirillo, J. D. Kaggie, A. Valencia, U. Metser, and P. Veit-Haibach
GOPHER, an HPC Framework for Large Scale Graph Exploration and Inference

High Performance Computing. ISC High Performance 2020. Lecture Notes in Computer Science

M. JosepFabregó, X. Teruel, V. Gimenez-Abalos, D. Cirillo, D. Garcia-Gasulla, S. Alvarez-Napagao, M. Garcia-Gasulla, E. Ayguadé, and A. Valencia
Sex and gender differences and biases in artificial intelligence for biomedicine and healthcare

Nature Digital Medicine

D. Cirillo, S. Catuara-Solarz, C. Morey, E. Guney, L. Subirats, S. Mellino, A. Gigante, A. Valencia, M. José Rementeria, A. Santuccion Chadha, and N. Mavridis
Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships

Nature Communications

J. Sánchez-Valle, H. Tejero, J. María Fernández, D. Juan, B. Urda-García, S. Capella-Gutierrez, F. Al-Shahrour, R. Tabarés-Seisdedos, A. Baudot, V. Pancaldi, and A. Valencia

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