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2022

The structural coverage of the human proteome before and after AlphaFold

PLoS computational biology

E. Porta-Pardo, V. Ruiz-Serra, S. Valentini, and A. Valencia
Digital biomarkers and sex impacts in Alzheimer’s disease management — potential utility for innovative 3P medicine approach

EPMA Journal

R. L. Harms, A. Ferrari, I. B. Meier, J. Martinkova, E. Santus, N. Marino, D. Cirillo, S. Mellino, S. Catuara Solarz, I. Tarnanas, C. Szoeke, J. Hort, A. Valencia, M. Teresa Ferretti, A. Seixas, and A. Santuccion Chadha
Patient-specific Boolean models of signalling networks guide personalised treatments

eLife

A. Montagud, J. Béal, L. Tobalina, P. Traynard, V. Subramanian, B. Szalai, R. Alföldi, L. Puskás, A. Valencia, E. Barillot, J. Saez-Rodriguez, and L. Calzone

2021

BiologyBioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems

G. Saxena, M. Ponce-de-Leon, A. Montagud, D. Vicente Dorca, and A. Valencia
Assessing the accuracy of contact and distance predictions in CASP14

Proteins: Structure, Function, and Bioinformatics

V. Ruiz‐Serra, C. Pontes, E. Milanetti, A. Kryshtafovych, R. Lepore, and A. Valencia
Pigs are not susceptible to SARS‐CoV‐2 infection but are a model for viral immunogenicity studies

Transboundary and Emerging Diseases

J. Vergara‐Alert, J. Rodon, J. Carrillo, N. Te, N. Izquierdo‐Useros, M. Luisa Rodr de la Concepción, C. Ávila‐Nieto, V. Guallar, A. Valencia, G. Cantero, J. Blanco, B. Clotet, A. Bensaid, and J. Segalés
Perspectives on emerging technologies, personalised medicine, and clinical research for cancer control in Latin America and the Caribbean

The Lancet Oncology

G. Werutsky, C. H. Barrios, A. F. Cardona, A. Albergaria, A. Valencia, C. G. Ferreira, C. Rolfo, E. de Azambuja, G. A. Rabinovich, G. Sposetti, O. Arrieta, R. Dienstmann, T. F. Rebelatto, V. Denninghoff, V. Aran, and E. Cazap
Unraveling the molecular basis of host cell receptor usage in SARS-CoV-2 and other human pathogenic β-CoVs

Computational and Structural Biotechnology Journal

C. Pontes, V. Ruiz-Serra, R. Lepore, and A. Valencia
BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems

G. Saxena, M. Ponce-de-Leon, A. Montagud, D. Vicente Dorca, and A. Valencia
STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells

Nucleic Acids Research

L. Richart, E. Lapi, V. Pancaldi, M. Cuenca-Ardura, E. Carrillo-d Pau, M. Madrid-Mencía, H. Neyret-Kahn, F. Radvanyi, J. Antonio Rodríguez, Y. Cuartero, F. Serra, F. Le Dily, A. Valencia, M. A. Marti-Renom, and F. X. Real

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