Spanish National Bioinformatics Institute (INB)/ELIXIR-ES, Coordination team

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Showing 1 - 25 results of 25

2024

2023

Cohort Profile: The Cardiovascular Research Data Catalogue

International Journal of Epidemiology

J. Reinikainen, T. Palosaari, A. J. Canosa-Valls, C. O. Schmidt, R. Wissa, S. Chadalavada, L. Codó, J. Lluis Gelpí, B. Joseph, A. van der Lugt, E. Pacella, S. E. Petersen, E. Ruiz Pujadas, L. Szabo, T. Zeller, T. Niiranen, K. Lekadir, and K. Kuulasmaa
RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12

Nucleic Acids Research

H. Salgado, S. Gama-Castro, P. Lara, C. Mejia-Almonte, G. Alarcón-Carranza, A. G. López-Almazo, F. Betancourt-Figueroa, P. Peña-Loredo, S. Alquicira-Hernández, D. Ledezma-Tejeida, L. Arizmendi-Zagal, F. Mendez-Hernandez, A. K. Diaz-Gomez, E. Ochoa-Praxedis, L. J. Muñiz-Rascado, J. S. García-Sotelo, F. A. Flores-Gallegos, L. Gómez, C. Bonavides-Martínez, V. M. del Moral-Chávez, A. J. Hernández-Alvarez, A. Santos-Zavaleta, S. Capella-Gutierrez, J. Lluis Gelpí, and J. Collado-Vides
The FAIR Cookbook - the essential resource for and by FAIR doersAbstractThe FAIR Cookbook - the essential resource for and by FAIR doers

Scientific Data

P. Rocca-Serra, W. Gu, V. Ioannidis, T. Abbassi-Daloii, S. Capella-Gutierrez, I. Chandramouliswaran, A. Splendiani, T. Burdett, R. T. Giessmann, D. Henderson, D. Batista, I. Emam, Y. Gadiya, L. Giovanni, E. Willighagen, C. Evelo, A. J. G. Gray, P. Gribbon, N. Juty, D. Welter, K. Quast, P. Peeters, T. Plasterer, C. Wood, E. van der Horst, D. Reilly, H. van Vlijmen, S. Scollen, A. Lister, M. Thurston, R. Granell, G. Backianathan, S. Baier, A. Cambon Thomsen, M. Cook, M. Courtot, M. d’Arcy, K. Dauth, E. Marin del Piico, L. Garcia, U. Goldmann, V. Grouès, D. J. B. Clarke, E. Lefloch, I. Liyanage, P. Papadopoulos, C. Pommier, E. Reynares, F. Ronzano, A. Delfin-Rossaro, V. Sagatopam, A. Sedani, V. Sedlyarov, L. Shilova, S. Singh, J. Strubel, K. van Bochove, Z. Warnes, P. Woollard, F. Xu, A. Zaliani, and S-A. Sansone
DEBBIE: The Open Access Database of Experimental Scaffolds and Biomaterials Built Using an Automated Text Mining Pipeline

Advanced Healthcare Materials

J. O. Corvi, A. McKitrick, J. M. Fernández, C. V. Fuenteslópez, J. L. Gelpí, M‐P. Ginebra, S. Capella‐Gutierrez, and O. Hakimi

2022

Automatic, Efficient and Scalable Provenance Registration for FAIR HPC Workflows

2022 IEEE/ACM Workshop on Workflows in Support of Large-Scale Science (WORKS)2022 IEEE/ACM Workshop on Workflows in Support of Large-Scale Science (WORKS)

R. Sirvent, J. Conejero, F. Lordan, J. Ejarque, L. Rodriguez-Navas, J. M. Fernández, S. Capella-Gutierrez, and R. M. Badia
Community-driven ELIXIR activities in single-cell omics

F1000Research

P. Czarnewski, A. Mahfouz, R. A. Calogero, P. M. Palagi, L. Portell-Silva, A. Gonzalez-Uriarte, C. Soneson, T. Burdett, B. Szomolay, P. Videm, H-R. Hotz, I. Papatheodorou, J. M. Hancock, B. Grüning, W. Haerty, R. Krause, S. Capella-Gutierrez, B. Leskošek, L. Alessandri, M. Arigoni, T. Rezen, A. Botzki, P. Ferk, J. Lindvall, K. F. Heil, N. Ishaque, and E. Korpelainen
Detection of early seeding of Richter transformation in chronic lymphocytic leukemia

Nature Medicine

F. Nadeu, R. Royo, R. Massoni-Badosa, H. Playa-Albinyana, B. Garcia-Torre, M. Duran-Ferrer, K. J. Dawson, M. Kulis, A. Diaz-Navarro, N. Villamor, J. L. Melero, V. Chapaprieta, A. Dueso-Barroso, J. Delgado, R. Moia, S. Ruiz-Gil, D. Marchese, A. Giró, N. Verdaguer-Dot, M. Romo, G. Clot, M. Rozman, G. Frigola, A. Rivas-Delgado, T. Baumann, M. Alcoceba, M. González, F. Climent, P. Abrisqueta, J. Castellví, F. Bosch, M. Aymerich, A. Enjuanes, S. Ruiz-Gaspà, A. López-Guillermo, P. Jares, S. Beà, S. Capella-Gutierrez, J. Ll. Gelpi, N. López-Bigas, D. Torrents, P. J. Campbell, I. Gut, D. Rossi, G. Gaidano, X. S. Puente, P. M. Garcia-Roves, D. Colomer, H. Heyn, F. Maura, J. I. Martin-Subero, and E. Campo
Quality measurement in agile and rapid software development: A systematic mapping

Journal of Systems and Software

L. López, X. Burgués, S. Martínez-Fernández, A. Maria Vollmer, W. Behutiye, P. Karhapää, X. Franch, P. Rodríguez, and M. Oivo

2021

Recommendations for the FAIRification of genomic track metadata

F1000Research

S. Gundersen, S. Boddu, S. Capella-Gutierrez, F. Drabløs, J. M. Fernández, R. Kompova, K. Taylor, D. Titov, D. Zerbino, and E. Hovig
Perspectives on automated composition of workflows in the life sciences

F1000Research

A-L. Lamprecht, M. Palmblad, J. Ison, V. Schwämmle, M. Sadnan Al Manir, I. Altintas, C. J. O. Baker, A. Ben Hadj Amor, S. Capella-Gutierrez, P. Charonyktakis, M. R. Crusoe, Y. Gil, C. Goble, T. J. Griffin, P. Groth, H. Ienasescu, P. Jagtap, M. Kalaš, V. Kasalica, A. Khanteymoori, T. Kuhn, H. Mei, H. Ménager, S. Möller, R. A. Richardson, V. Robert, S. Soiland-Reyes, R. Stevens, S. Szaniszlo, S. Verberne, A. Verhoeven, and K. Wolstencroft
FGFR Inhibition Overcomes Resistance to EGFR-targeted Therapy in Epithelial-like Cutaneous Carcinoma

Clinical Cancer Research

A. Bernat-Peguera, J. Navarro-Ventura, L. Lorenzo-Sanz, V. da Silva-Diz, M. Bosio, L. Palomero, R. M. Penin, D. Pérez Sidelnikova, J. Oriol Bermejo, M. Taberna, N. Vilariño, J. M. Piulats, R. Mesia, J. Maria Viñals, E. Gonzalez-Suarez, S. Capella-Gutierrez, A. Villanueva, F. Viñals, and P. Muñoz
PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies

Nucleic Acids Research

D. Fuentes, M. Molina, U. Chorostecki, S. Capella-Gutierrez, M. Marcet-Houben, and T. Gabaldón
Recommendations for the FAIRification of genomic track metadata

F1000Research

S. Gundersen, S. Boddu, S. Capella-Gutierrez, F. Drabløs, J. M. Fernández, R. Kompova, K. Taylor, D. Titov, D. Zerbino, and E. Hovig
Recommendations for the FAIRification of genomic track metadata

F1000Research

S. Gundersen, S. Boddu, S. Capella-Gutierrez, F. Drabløs, J. M. Fernández, R. Kompova, K. Taylor, D. Titov, D. Zerbino, and E. Hovig
A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing

F1000Research

M. Petrillo, M. Fabbri, D. Maria Kagkli, M. Querci, G. Van den Eede, E. Alm, D. Aytan-Aktug, S. Capella-Gutierrez, C. Carrillo, A. Cestaro, K-G. Chan, T. Coque, C. Endrullat, I. Gut, P. Hammer, G. L. Kay, J-Y. Madec, A. E. Mather, A. Carolyn McHardy, T. Naas, V. Paracchini, S. Peter, A. Pightling, B. Raffael, J. Rossen, E. Ruppé, R. Schlaberg, K. Vanneste, L. M. Weber, H. Westh, and A. Angers-Loustau
ELIXIR‐EXCELERATE: establishing Europe's data infrastructure for the life science research of the future

The EMBO Journal

J. Harrow, J. Hancock, N. Blomberg, N. Blomberg, S. Brunak, S. Capella-Gutierrez, C. Durinx, C. T. Evelo, C. Goble, I. Gut, J. Ison, T. Keane, B. Leskošek, L. Matyska, J. McEntyre, C. Miguel, A. Navarro, S. Newhouse, T. Nyrönen, P. Palagi, B. Persson, C. Pommier, J. Rambla, M. Roos, G. Rustici, A. Smith, A. Valencia, C. van Gelder, J. Vondrášek, N. Peder Willassen, J. Arenas, H. Parkinson, R. D. Finn, S. Beltran, L. Matalonga, H. Hurst, P. Kersey, I. Lappalainen, P. Kahlem, G. Saunders, S. Sarntivijai, R. Drysdale, J. Tedds, J. Lanfear, and J. Harrow
DOME: recommendations for supervised machine learning validation in biology

Nature Methods

I. Walsh, D. Fishman, D. Garcia-Gasulla, T. Titma, G. Pollastri, E. Capriotti, R. Casadio, S. Capella-Gutierrez, D. Cirillo, A. Del Conte, A. C. Dimopoulos, V. Dominguez Del Angel, J. Dopazo, P. Fariselli, J. Maria Fernández, F. Huber, A. Kreshuk, T. Lenaerts, P. Luigi Martelli, A. Navarro, P. Ó. Broin, J. Piñero, D. Piovesan, M. Reczko, F. Ronzano, V. Satagopam, C. Savojardo, V. Spiwok, M. Antonio Tangaro, G. Tartari, D. Salgado, A. Valencia, F. Zambelli, J. Harrow, F. E. Psomopoulos, and S. C. E. Tosatto
The Biomaterials Annotator: a system for ontology-based concept annotation of biomaterials text

Proceedings of the Second Workshop on Scholarly Document Processing

J. Corvi, C. Fuenteslópez, J. Fernández, J. Gelpí, M-P. Ginebra, S. Capella-Gutierrez, and O. Hakimi
The eTRANSAFE Project on Translational Safety Assessment through Integrative Knowledge Management: Achievements and Perspectives

Pharmaceuticals

F. Pognan, T. Steger-Hartmann, C. Díaz, N. Blomberg, F. Bringezu, K. Briggs, G. Callegaro, S. Capella-Gutierrez, E. Centeno, J. Corvi, P. Drew, W. C. Drewe, J. M. Fernández, L. I. Furlong, E. Guney, J. A. Kors, M. Angel Mayer, M. Pastor, J. Piñero, J. Manuel Ramírez-Anguita, F. Ronzano, P. Rowell, J. Saüch-Pitarch, A. Valencia, B. van de Water, J. van der Lei, E. van Mulligen, and F. Sanz

2020

2019

2017

Four simple recommendations to encourage best practices in research software

F1000Research

R. C. Jiménez, M. Kuzak, M. Alhamdoosh, M. Barker, B. Batut, M. Borg, S. Capella-Gutierrez, N. Chue Hong, M. Cook, M. Corpas, M. Flannery, L. Garcia, J L. Gelpí, S. Gladman, C. Goble, M. González Ferreiro, A. Gonzalez-Beltran, P. C. Griffin, B. Grüning, J. Hagberg, P. Holub, R. Hooft, J. Ison, D. S. Katz, B. Leskošek, F. López Gómez, L. J. Oliveira, D. Mellor, R. Mosbergen, N. Mulder, Y. Perez-Riverol, R. Pergl, H. Pichler, B. Pope, F. Sanz, M. V. Schneider, V. Stodden, R. Suchecki, R. Svobodová Vařeková, H-A. Talvik, I. Todorov, A. Treloar, S. Tyagi, M. van Gompel, D. Vaughan, A. Via, X. Wang, N. S. Watson-Haigh, and S. Crouch
LimTox: a web tool for applied text mining of adverse event and toxicity associations of compounds, drugs and genes

Nucleic Acids Research

A. Cañada, S. Capella-Gutierrez, O. Rabal, J. Oyarzabal, A. Valencia, and M. Krallinger

2016

The BLUEPRINT Data Analysis Portal

Cell Systems

J. MaríaFernández, V. de la Torre, D. Richardson, R. Royo, M. Puiggròs, V. Moncunill, S. Fragkogianni, L. Clarke, P. Flicek, D. Rico, D. Torrents, E. Carrillo d Pau, and A. Valencia