Deterministic and standard extractor of indels, SNVs and structural variants (SVs) from VCF files. VariantExtractor is a Python package (requires Python version 3.6 or higher) and provides a set of data structures and functions to extract variants from VCF files in a deterministic and standard way while adding information to facilitate afterwards processing. It homogenizes multiallelic variants, MNPs and SVs (including imprecise paired breakends and single breakends). The package is designed to be used in a pipeline, where the variants are ingested from VCF files and then used in downstream analysis.
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MIT License
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